miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 7469 0.68 0.370114
Target:  5'- gGGCCGGAcaCCGACGCUgacaaGgGCCGGUu -3'
miRNA:   3'- gUCGGUCU--GGCUGCGGac---CgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7555 0.7 0.300209
Target:  5'- -uGCUGGACCGGCcCCgggUGGCGCUGGUg -3'
miRNA:   3'- guCGGUCUGGCUGcGG---ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7632 0.66 0.518907
Target:  5'- gAGCCAGcucGCCGugGCg-GGCGuggugaccgggUCGGCg -3'
miRNA:   3'- gUCGGUC---UGGCugCGgaCCGU-----------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7702 0.76 0.109987
Target:  5'- --uCCAGGCCGuCGCCgUGGCGCUGGCc -3'
miRNA:   3'- gucGGUCUGGCuGCGG-ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8059 0.66 0.518907
Target:  5'- aCGGCCGGGUCGugGCCgagUGGCcaaucgaggagcGCCcgugAGCa -3'
miRNA:   3'- -GUCGGUCUGGCugCGG---ACCG------------UGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 8303 0.71 0.253222
Target:  5'- -uGCCGGagugguuggcGCUGACGCCggaagaggUGcGCGCCAGCg -3'
miRNA:   3'- guCGGUC----------UGGCUGCGG--------AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8322 0.67 0.459856
Target:  5'- gAGCUAcuGGCUGAC-CCUGGCcCUGGCc -3'
miRNA:   3'- gUCGGU--CUGGCUGcGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8396 0.66 0.518907
Target:  5'- uGGCgCAGuCCGGCgauGCCgaacGGUaACCAGCg -3'
miRNA:   3'- gUCG-GUCuGGCUG---CGGa---CCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8540 0.68 0.395763
Target:  5'- gGGCCGGACgagGugGaCCUGuGCGCCGaccGCa -3'
miRNA:   3'- gUCGGUCUGg--CugC-GGAC-CGUGGU---CG- -5'
19115 5' -60.2 NC_004684.1 + 8749 0.68 0.395763
Target:  5'- aAGCCAcgGAuaGAgGCCcagcgcGGCACCAGCc -3'
miRNA:   3'- gUCGGU--CUggCUgCGGa-----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 8856 0.7 0.286131
Target:  5'- gGGCCuGGACgUGuCGCCUGaGCGCCuGCu -3'
miRNA:   3'- gUCGG-UCUG-GCuGCGGAC-CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 8995 0.68 0.378537
Target:  5'- gCGGCCGGGCCaAgGCCUccacgcgcGGUGCCGuGCg -3'
miRNA:   3'- -GUCGGUCUGGcUgCGGA--------CCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 9227 0.66 0.519917
Target:  5'- gGGCCAGgacccgaaccugcuGCCGACGC-UGGCggugcucauccccgaGCUGGCc -3'
miRNA:   3'- gUCGGUC--------------UGGCUGCGgACCG---------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9372 0.71 0.247025
Target:  5'- gAGCCGGACaccgaggaCGACGCC-GGUACCgacgacAGCg -3'
miRNA:   3'- gUCGGUCUG--------GCUGCGGaCCGUGG------UCG- -5'
19115 5' -60.2 NC_004684.1 + 9515 0.7 0.272578
Target:  5'- cCAGCCAGcACCGGuccuggcgUGCCgGGaCGCUGGCa -3'
miRNA:   3'- -GUCGGUC-UGGCU--------GCGGaCC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9583 0.69 0.320056
Target:  5'- gGGaCCAGGCCGugGUCggguucccaggucuUGGC-CCAGUc -3'
miRNA:   3'- gUC-GGUCUGGCugCGG--------------ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9793 0.66 0.469458
Target:  5'- -cGCCgAGGCCcuGCGCCggUGGCACCcgacGCu -3'
miRNA:   3'- guCGG-UCUGGc-UGCGG--ACCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 9870 0.67 0.450358
Target:  5'- -cGCCGGAucCCGACGCC--GCGCaggAGCa -3'
miRNA:   3'- guCGGUCU--GGCUGCGGacCGUGg--UCG- -5'
19115 5' -60.2 NC_004684.1 + 9874 0.7 0.293104
Target:  5'- gGGCCaccgccucgGGAuCCGGCGCa-GGCACCuGCg -3'
miRNA:   3'- gUCGG---------UCU-GGCUGCGgaCCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 10154 0.68 0.361821
Target:  5'- uCAGCCAG-CCGcCG-CUGGcCACCGcGCu -3'
miRNA:   3'- -GUCGGUCuGGCuGCgGACC-GUGGU-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.