miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 10240 0.66 0.508841
Target:  5'- uCGGCC--ACCGcCGCCaUGGaggcgaACCAGCc -3'
miRNA:   3'- -GUCGGucUGGCuGCGG-ACCg-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 10277 0.67 0.413488
Target:  5'- uGGCCAG--CGACGCCggugucGCGCCAGa -3'
miRNA:   3'- gUCGGUCugGCUGCGGac----CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 10624 0.72 0.214621
Target:  5'- cCAGCCGucggcgucgucaccACCGugGUCUGGUGCCGGUu -3'
miRNA:   3'- -GUCGGUc-------------UGGCugCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 10727 0.75 0.132771
Target:  5'- gCAGCCAGGCCGACGagauCgagcGGCGCaAGCg -3'
miRNA:   3'- -GUCGGUCUGGCUGCg---Ga---CCGUGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 11108 0.67 0.440969
Target:  5'- gGGCCGGGCUGAUGCCUuGGaUGCgC-GCg -3'
miRNA:   3'- gUCGGUCUGGCUGCGGA-CC-GUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 11155 0.67 0.440969
Target:  5'- -cGCCGu-CgGugGaCCUGGcCGCCAGCg -3'
miRNA:   3'- guCGGUcuGgCugC-GGACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 11162 0.67 0.450358
Target:  5'- -uGCgCAGGCUGAcCGCCUGcauGCGCC-GCu -3'
miRNA:   3'- guCG-GUCUGGCU-GCGGAC---CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 11590 0.7 0.299493
Target:  5'- cCAGCCc-GCCGguGCGCCUggacgacGGCACCgAGCu -3'
miRNA:   3'- -GUCGGucUGGC--UGCGGA-------CCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 11729 0.71 0.264048
Target:  5'- gCAGCUGGugCGcCGCCaGGCccuccuccacgcacGCCAGCc -3'
miRNA:   3'- -GUCGGUCugGCuGCGGaCCG--------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 11782 0.66 0.486996
Target:  5'- uGGCCccguGGGCCGACcagGCCaccguggagaagGGCGCgAGCg -3'
miRNA:   3'- gUCGG----UCUGGCUG---CGGa-----------CCGUGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 11926 0.77 0.101388
Target:  5'- aCAGCCAGggccguccGCUGGCcauggucgccaGCCUGGCACCuGCg -3'
miRNA:   3'- -GUCGGUC--------UGGCUG-----------CGGACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 11929 0.77 0.104181
Target:  5'- uCGGCCAGGCCuucaccGCGCUUGGCgacauagaccACCGGCg -3'
miRNA:   3'- -GUCGGUCUGGc-----UGCGGACCG----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12049 0.68 0.404565
Target:  5'- cCAGCaggAGGCgGcuCGCCUGGCcGCCgAGCg -3'
miRNA:   3'- -GUCGg--UCUGgCu-GCGGACCG-UGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 12175 0.66 0.508841
Target:  5'- -cGCgCGGuGCCaACGCCUcguaGGCAuCCAGCg -3'
miRNA:   3'- guCG-GUC-UGGcUGCGGA----CCGU-GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12526 0.8 0.056824
Target:  5'- gGGCCAcGACCGuggcagcaaACGCCUGGUugcuGCCAGCg -3'
miRNA:   3'- gUCGGU-CUGGC---------UGCGGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12591 0.68 0.370114
Target:  5'- uCAGCCAGGgucaUCGGCuCCUGGCGCgC-GCu -3'
miRNA:   3'- -GUCGGUCU----GGCUGcGGACCGUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 12609 0.71 0.253222
Target:  5'- -cGCCAcGCCG-CGCaccuugcgGGCACCGGCg -3'
miRNA:   3'- guCGGUcUGGCuGCGga------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12742 0.67 0.422531
Target:  5'- aGGCCgAGGUCGACGCCcucuUGGC-CCGcGCg -3'
miRNA:   3'- gUCGG-UCUGGCUGCGG----ACCGuGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 12875 0.69 0.320056
Target:  5'- -cGCCgAGGCCGcCGCCgGGgagccugcgcucgcCGCCAGCg -3'
miRNA:   3'- guCGG-UCUGGCuGCGGaCC--------------GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 13188 0.69 0.322321
Target:  5'- aCAGCCAcGACCugGugGCUgaaaucgagcgGGCgACCAGCc -3'
miRNA:   3'- -GUCGGU-CUGG--CugCGGa----------CCG-UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.