miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 13252 0.75 0.132771
Target:  5'- uGGCCAGGCCGugaccgccaGCGCgCUGGUggccGCCGGUg -3'
miRNA:   3'- gUCGGUCUGGC---------UGCG-GACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 13803 0.66 0.508841
Target:  5'- gCGGCgCAcuGuCCGAcCGCCUGGagcacgauUACCAGCu -3'
miRNA:   3'- -GUCG-GU--CuGGCU-GCGGACC--------GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 13914 0.71 0.247025
Target:  5'- aCGGCCAGAUCGACaGCuggCUGGCgGCUcGCa -3'
miRNA:   3'- -GUCGGUCUGGCUG-CG---GACCG-UGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 13989 0.67 0.440969
Target:  5'- aGGCCAGcCCGGCcaCCUGGaCACgGuGCa -3'
miRNA:   3'- gUCGGUCuGGCUGc-GGACC-GUGgU-CG- -5'
19115 5' -60.2 NC_004684.1 + 14296 0.73 0.18212
Target:  5'- uGGCCuugcAGGCCGccgcgcagguguACGCC-GGUACCAGCg -3'
miRNA:   3'- gUCGG----UCUGGC------------UGCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 14481 0.66 0.508841
Target:  5'- gCGGCCAcgccgccgugcuGGCCgGACGCucCUGGgugcaugcCACCGGCa -3'
miRNA:   3'- -GUCGGU------------CUGG-CUGCG--GACC--------GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 14490 0.67 0.450358
Target:  5'- -uGCCGGuACC-ACGCC-GGuCGCCGGUg -3'
miRNA:   3'- guCGGUC-UGGcUGCGGaCC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 14689 0.71 0.240955
Target:  5'- uGGCgAGGCCGACGggcgcgaggaCCUGGCcaACCGGg -3'
miRNA:   3'- gUCGgUCUGGCUGC----------GGACCG--UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 15006 0.74 0.164087
Target:  5'- -uGCCuGACCGcCGCCUGG-AUCGGCu -3'
miRNA:   3'- guCGGuCUGGCuGCGGACCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15055 0.67 0.440969
Target:  5'- -uGCUGGAuCCGAUucgcugGCCUGcGCACCGcGCa -3'
miRNA:   3'- guCGGUCU-GGCUG------CGGAC-CGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 15137 0.66 0.488964
Target:  5'- -cGCCAGcuucgacguACCGcCGCUgUGGCACCacGGCc -3'
miRNA:   3'- guCGGUC---------UGGCuGCGG-ACCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 15263 0.66 0.518907
Target:  5'- uGGCCuGGCCaACacCCUGGUggccACCAGCc -3'
miRNA:   3'- gUCGGuCUGGcUGc-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15523 0.68 0.395763
Target:  5'- gGGCCGGGCgcuggaGGCGCUgauccgcguUGGUggACCGGCg -3'
miRNA:   3'- gUCGGUCUGg-----CUGCGG---------ACCG--UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 15684 0.74 0.167999
Target:  5'- uGGCCAGcggcggcACCGACGCCaccGGCAUCGuGCu -3'
miRNA:   3'- gUCGGUC-------UGGCUGCGGa--CCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 15753 0.66 0.508841
Target:  5'- aCGGCCAGcaGCUG-CGCagcGGCACCuaucGCg -3'
miRNA:   3'- -GUCGGUC--UGGCuGCGga-CCGUGGu---CG- -5'
19115 5' -60.2 NC_004684.1 + 16080 0.66 0.479162
Target:  5'- uGGCCGguGACCGGgaguuCCUGGCACCGu- -3'
miRNA:   3'- gUCGGU--CUGGCUgc---GGACCGUGGUcg -5'
19115 5' -60.2 NC_004684.1 + 16203 0.69 0.314818
Target:  5'- aCGGCCAGGgCG-CGCgguccaUGGC-CCGGCg -3'
miRNA:   3'- -GUCGGUCUgGCuGCGg-----ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 17056 0.69 0.353658
Target:  5'- -uGCCaaggAGGCCGccCGCCUGGC-CgGGCg -3'
miRNA:   3'- guCGG----UCUGGCu-GCGGACCGuGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 17105 0.66 0.469458
Target:  5'- aAGUC--GCCGucGgGCCUGGCGCUGGCc -3'
miRNA:   3'- gUCGGucUGGC--UgCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 17335 0.72 0.226894
Target:  5'- gCAGCUcGACCGGuuccuggccuggaGCCaGGCACCGGCc -3'
miRNA:   3'- -GUCGGuCUGGCUg------------CGGaCCGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.