miRNA display CGI


Results 21 - 40 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 61542 0.73 0.186895
Target:  5'- -uGCCAG-UCGcACGCCUGGUccucgaacaccGCCAGCu -3'
miRNA:   3'- guCGGUCuGGC-UGCGGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61495 0.7 0.293104
Target:  5'- -cGCgCAGGCggCGGCGCUcgaUGcGCGCCAGCa -3'
miRNA:   3'- guCG-GUCUG--GCUGCGG---AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61449 0.72 0.223489
Target:  5'- gCGGCCAGGuuGGacCGCCcGGUgGCCAGCg -3'
miRNA:   3'- -GUCGGUCUggCU--GCGGaCCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61409 0.73 0.19178
Target:  5'- gAGCCAGGCCGGgacuuCGCUcGGCcggucgcucACCGGCg -3'
miRNA:   3'- gUCGGUCUGGCU-----GCGGaCCG---------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61352 0.69 0.345625
Target:  5'- uCAGCUGGGCCG-CGa--GGCGCUGGCg -3'
miRNA:   3'- -GUCGGUCUGGCuGCggaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61320 0.71 0.245191
Target:  5'- -cGCCGGGCCGcCGCCcucggcggcguaggUGGCgGCCAGg -3'
miRNA:   3'- guCGGUCUGGCuGCGG--------------ACCG-UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 60586 0.66 0.497865
Target:  5'- aGGCCGacggcgucguaguGGCCGuCGuCCaGuGCACCGGCg -3'
miRNA:   3'- gUCGGU-------------CUGGCuGC-GGaC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 60083 0.67 0.440969
Target:  5'- uCGGCCAuGGCCGGguuCGCgUGGUGCagugCGGCg -3'
miRNA:   3'- -GUCGGU-CUGGCU---GCGgACCGUG----GUCG- -5'
19115 5' -60.2 NC_004684.1 + 60046 0.68 0.404565
Target:  5'- -uGCCAGGCCu-CGCacucgUGGCGCgCGGCc -3'
miRNA:   3'- guCGGUCUGGcuGCGg----ACCGUG-GUCG- -5'
19115 5' -60.2 NC_004684.1 + 59952 0.75 0.135999
Target:  5'- cCAGCCAG-UCGGCgaaacgggucaguGCCUGGUagcGCCAGCg -3'
miRNA:   3'- -GUCGGUCuGGCUG-------------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59825 0.69 0.353658
Target:  5'- cCAGCCGcACCaGCGCCacccggGGCcgguCCAGCa -3'
miRNA:   3'- -GUCGGUcUGGcUGCGGa-----CCGu---GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59757 0.67 0.459856
Target:  5'- gAGCguGACCcagaugcuGACGCaccacgGGCACCGGa -3'
miRNA:   3'- gUCGguCUGG--------CUGCGga----CCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 59550 0.67 0.450358
Target:  5'- -cGCCAG-CgCG-CGCCguugucGCACCAGCg -3'
miRNA:   3'- guCGGUCuG-GCuGCGGac----CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59301 0.68 0.387087
Target:  5'- uGGgCAGGCCGGUGUCggggucgaUGGCGCUGGCa -3'
miRNA:   3'- gUCgGUCUGGCUGCGG--------ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59201 0.7 0.293104
Target:  5'- -cGCUuGAUCagcuGCGCCUGGC-CCAGCg -3'
miRNA:   3'- guCGGuCUGGc---UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58943 0.73 0.172444
Target:  5'- aCAGCCAGGCCuuGCGCCgGGCccuguccGCCgAGCu -3'
miRNA:   3'- -GUCGGUCUGGc-UGCGGaCCG-------UGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 58449 0.67 0.450358
Target:  5'- -uGCCGGAcCCGACuGCCc-GCugagGCCAGCg -3'
miRNA:   3'- guCGGUCU-GGCUG-CGGacCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58248 0.7 0.279289
Target:  5'- uCGGCCAGGCCGAgcaucuUGaCCaUGGCcUCGGCg -3'
miRNA:   3'- -GUCGGUCUGGCU------GC-GG-ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58166 0.73 0.186895
Target:  5'- gAGCCGGugCGACuguGCCgc-CACCAGCa -3'
miRNA:   3'- gUCGGUCugGCUG---CGGaccGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57994 0.69 0.345625
Target:  5'- uGGCCuGAUCGcUGUCgucGGUACCGGCg -3'
miRNA:   3'- gUCGGuCUGGCuGCGGa--CCGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.