miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 57879 0.69 0.353658
Target:  5'- -cGCCAGACCGGUG-CUGGCuggugGCCGGg -3'
miRNA:   3'- guCGGUCUGGCUGCgGACCG-----UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 57796 0.69 0.314818
Target:  5'- gGGCCaAGAccugggaacCCGACcacgGCCUGGUcCCGGCg -3'
miRNA:   3'- gUCGG-UCU---------GGCUG----CGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57719 0.66 0.488964
Target:  5'- uGGCCaaGGACUGguggcACGCCcaGGCGgCAGCu -3'
miRNA:   3'- gUCGG--UCUGGC-----UGCGGa-CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57570 0.66 0.469458
Target:  5'- aCGGCaAGACgGugGCCUugagcgucgGGUgccACCGGCg -3'
miRNA:   3'- -GUCGgUCUGgCugCGGA---------CCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 57035 0.67 0.413488
Target:  5'- uGGUCGGucACgGugGgCCacGGCACCAGCg -3'
miRNA:   3'- gUCGGUC--UGgCugC-GGa-CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 56991 0.67 0.440969
Target:  5'- uGGCguGguucugcacGCUGGCgGCCUGGUACCcGGCg -3'
miRNA:   3'- gUCGguC---------UGGCUG-CGGACCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 56820 0.68 0.404565
Target:  5'- cCAGCCGGAUCGGCGg--GGaaCGCCAGg -3'
miRNA:   3'- -GUCGGUCUGGCUGCggaCC--GUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 56718 0.69 0.337725
Target:  5'- aAGCUGGcgguGCUGAUGCC--GCGCCAGCa -3'
miRNA:   3'- gUCGGUC----UGGCUGCGGacCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 56593 0.66 0.478188
Target:  5'- -cGCCGGaugccgcuacgguGCCGACGCCgucgcgGGUgucGCgGGCa -3'
miRNA:   3'- guCGGUC-------------UGGCUGCGGa-----CCG---UGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 56490 0.66 0.479162
Target:  5'- uCGGCCuGuacgcGCCGAC-CCgggUGGuCACCGGCg -3'
miRNA:   3'- -GUCGGuC-----UGGCUGcGG---ACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 56014 0.71 0.259545
Target:  5'- aGGCCAcGAUgGACGCCaccaccGGCACCucGCg -3'
miRNA:   3'- gUCGGU-CUGgCUGCGGa-----CCGUGGu-CG- -5'
19115 5' -60.2 NC_004684.1 + 55943 0.75 0.129268
Target:  5'- gGGCgAGGCCGACGCCgacgccGcGCuCCAGCg -3'
miRNA:   3'- gUCGgUCUGGCUGCGGa-----C-CGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 55751 0.73 0.176993
Target:  5'- uGGCguGGCCGAUGCCgacGGUcaggcggccgacgGCCAGCu -3'
miRNA:   3'- gUCGguCUGGCUGCGGa--CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 55673 0.66 0.498858
Target:  5'- --cCCGGACCaACGCCcagcaGGCGUCAGCg -3'
miRNA:   3'- gucGGUCUGGcUGCGGa----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 55449 0.7 0.286131
Target:  5'- -uGCCAGGCUGGCGaCCaUGGC--CAGCg -3'
miRNA:   3'- guCGGUCUGGCUGC-GG-ACCGugGUCG- -5'
19115 5' -60.2 NC_004684.1 + 55331 0.67 0.459856
Target:  5'- -cGCCGacGGCUGGCaggugaGCCUGGCGCgCAuGCa -3'
miRNA:   3'- guCGGU--CUGGCUG------CGGACCGUG-GU-CG- -5'
19115 5' -60.2 NC_004684.1 + 54799 0.66 0.479162
Target:  5'- -cGCCAGgaGCCGAUGacCCUGGCugaguucgACCGGg -3'
miRNA:   3'- guCGGUC--UGGCUGC--GGACCG--------UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 54229 0.66 0.492911
Target:  5'- uCGGCCAGcagcuguuccagggcACCG-CGCCgGGacagcuccucaGCCAGCg -3'
miRNA:   3'- -GUCGGUC---------------UGGCuGCGGaCCg----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 54095 0.66 0.488964
Target:  5'- aCAGCUgcuCCGACGgC-GcGCACCAGCc -3'
miRNA:   3'- -GUCGGucuGGCUGCgGaC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 53985 0.66 0.478188
Target:  5'- gAGCaGGGCCGAcaCGUCcGGCucaaucgGCCAGCg -3'
miRNA:   3'- gUCGgUCUGGCU--GCGGaCCG-------UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.