miRNA display CGI


Results 61 - 80 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 53784 0.68 0.361821
Target:  5'- --cCCAGACCGGCGC--GGCGCUGGg -3'
miRNA:   3'- gucGGUCUGGCUGCGgaCCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 53618 0.69 0.337725
Target:  5'- aGGCgCAGGuuGGuCGCCUGgaGCGCCAGg -3'
miRNA:   3'- gUCG-GUCUggCU-GCGGAC--CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 53411 0.67 0.459856
Target:  5'- uGGCCGGGCUG--GCCU-GCGCCGcGCg -3'
miRNA:   3'- gUCGGUCUGGCugCGGAcCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 53056 0.71 0.247025
Target:  5'- cCAGCaCGGugguguCCGACuCgCUGGUACCGGCg -3'
miRNA:   3'- -GUCG-GUCu-----GGCUGcG-GACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 52896 0.71 0.23501
Target:  5'- -uGCCAccggcGACCGGCGU--GGUACCGGCa -3'
miRNA:   3'- guCGGU-----CUGGCUGCGgaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 52629 0.67 0.422531
Target:  5'- -uGCCGGGCaCGuCGCCau-CACCGGCa -3'
miRNA:   3'- guCGGUCUG-GCuGCGGaccGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 52527 0.67 0.431693
Target:  5'- aAGCCGGugUGGagccaggaggUGUCcGGCACCGGUu -3'
miRNA:   3'- gUCGGUCugGCU----------GCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 52245 0.7 0.279289
Target:  5'- gCGGCCAG-CUG-CGCgCUGGCGuggaucaggcCCAGCg -3'
miRNA:   3'- -GUCGGUCuGGCuGCG-GACCGU----------GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 51814 0.73 0.18212
Target:  5'- aCGGCCAGGCCGcGCGCgCU-GCGCUggAGCa -3'
miRNA:   3'- -GUCGGUCUGGC-UGCG-GAcCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 51185 0.76 0.116094
Target:  5'- gGGCCauGGACCGcGCGcCCUGGCcguacaucgugGCCAGCa -3'
miRNA:   3'- gUCGG--UCUGGC-UGC-GGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50933 0.69 0.352849
Target:  5'- aCAGCCcGGCCucguccaGGCGCacgaUGGUgugcGCCAGCa -3'
miRNA:   3'- -GUCGGuCUGG-------CUGCGg---ACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50791 0.74 0.170208
Target:  5'- gCGGUCGGugCGcaacaugaagucgucGCGCUUGGC-CCAGCg -3'
miRNA:   3'- -GUCGGUCugGC---------------UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50666 0.66 0.479162
Target:  5'- gCGGaCCAGGCguGCGCCcGGUGCCGuGCa -3'
miRNA:   3'- -GUC-GGUCUGgcUGCGGaCCGUGGU-CG- -5'
19115 5' -60.2 NC_004684.1 + 50521 0.7 0.300209
Target:  5'- --aCCAcACCGGCGCagacaCUGGcCACCAGCa -3'
miRNA:   3'- gucGGUcUGGCUGCG-----GACC-GUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50332 0.8 0.058429
Target:  5'- cCGGCCAGGCgGGCgGCCuccuUGGCAUCGGCa -3'
miRNA:   3'- -GUCGGUCUGgCUG-CGG----ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50129 0.68 0.404565
Target:  5'- uGGCCAGGuuGAuCGgCgGGCacuccACCAGCg -3'
miRNA:   3'- gUCGGUCUggCU-GCgGaCCG-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 50033 0.79 0.072952
Target:  5'- gCAGCguGGCCGGUGCCUGGCuCCAGg -3'
miRNA:   3'- -GUCGguCUGGCUGCGGACCGuGGUCg -5'
19115 5' -60.2 NC_004684.1 + 49228 0.69 0.337725
Target:  5'- -uGCCGGGCCgGGCGUC-GGCACgucgccccaCAGCg -3'
miRNA:   3'- guCGGUCUGG-CUGCGGaCCGUG---------GUCG- -5'
19115 5' -60.2 NC_004684.1 + 49052 0.68 0.361821
Target:  5'- -cGCCGG-UCGGCuCCgggggcGGCACCGGCg -3'
miRNA:   3'- guCGGUCuGGCUGcGGa-----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 49001 0.68 0.402794
Target:  5'- uGGCCGGGcCCGACcCCgcugaacagaucGGCcACCGGCg -3'
miRNA:   3'- gUCGGUCU-GGCUGcGGa-----------CCG-UGGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.