Results 1 - 20 of 313 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 47649 | 0.72 | 0.206583 |
Target: 5'- aCGGCCAGugCGGCG-UUGGCcgccuugAUCAGCg -3' miRNA: 3'- -GUCGGUCugGCUGCgGACCG-------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 27322 | 0.74 | 0.159836 |
Target: 5'- gCGGCCAGcuuugacgacgGCgGuauCGCCgugGGCACCGGCa -3' miRNA: 3'- -GUCGGUC-----------UGgCu--GCGGa--CCGUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 15684 | 0.74 | 0.167999 |
Target: 5'- uGGCCAGcggcggcACCGACGCCaccGGCAUCGuGCu -3' miRNA: 3'- gUCGGUC-------UGGCUGCGGa--CCGUGGU-CG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 50791 | 0.74 | 0.170208 |
Target: 5'- gCGGUCGGugCGcaacaugaagucgucGCGCUUGGC-CCAGCg -3' miRNA: 3'- -GUCGGUCugGC---------------UGCGGACCGuGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 58943 | 0.73 | 0.172444 |
Target: 5'- aCAGCCAGGCCuuGCGCCgGGCccuguccGCCgAGCu -3' miRNA: 3'- -GUCGGUCUGGc-UGCGGaCCG-------UGG-UCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 42267 | 0.73 | 0.177454 |
Target: 5'- gAGCaAGACCGACaCCUgGGCAauCCAGCa -3' miRNA: 3'- gUCGgUCUGGCUGcGGA-CCGU--GGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 51814 | 0.73 | 0.18212 |
Target: 5'- aCGGCCAGGCCGcGCGCgCU-GCGCUggAGCa -3' miRNA: 3'- -GUCGGUCUGGC-UGCG-GAcCGUGG--UCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 58166 | 0.73 | 0.186895 |
Target: 5'- gAGCCGGugCGACuguGCCgc-CACCAGCa -3' miRNA: 3'- gUCGGUCugGCUG---CGGaccGUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 6026 | 0.72 | 0.201886 |
Target: 5'- uGGCCuuuAGGCCGccaGCGCCUcgcGGC-CCAGCu -3' miRNA: 3'- gUCGG---UCUGGC---UGCGGA---CCGuGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 26550 | 0.74 | 0.151632 |
Target: 5'- aGGCCGGGguguacgcguuCCGGCGCgccCUGGCGCgCGGCg -3' miRNA: 3'- gUCGGUCU-----------GGCUGCG---GACCGUG-GUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 21899 | 0.75 | 0.143812 |
Target: 5'- gCAGCCuuGugCGAUaGCCUGGC-CCGGUg -3' miRNA: 3'- -GUCGGu-CugGCUG-CGGACCGuGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 64209 | 0.75 | 0.136362 |
Target: 5'- -uGCCGGAUCGACaCCUGGgACaCGGCg -3' miRNA: 3'- guCGGUCUGGCUGcGGACCgUG-GUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 50033 | 0.79 | 0.072952 |
Target: 5'- gCAGCguGGCCGGUGCCUGGCuCCAGg -3' miRNA: 3'- -GUCGguCUGGCUGCGGACCGuGGUCg -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 11926 | 0.77 | 0.101388 |
Target: 5'- aCAGCCAGggccguccGCUGGCcauggucgccaGCCUGGCACCuGCg -3' miRNA: 3'- -GUCGGUC--------UGGCUG-----------CGGACCGUGGuCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 7702 | 0.76 | 0.109987 |
Target: 5'- --uCCAGGCCGuCGCCgUGGCGCUGGCc -3' miRNA: 3'- gucGGUCUGGCuGCGG-ACCGUGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 51185 | 0.76 | 0.116094 |
Target: 5'- gGGCCauGGACCGcGCGcCCUGGCcguacaucgugGCCAGCa -3' miRNA: 3'- gUCGG--UCUGGC-UGC-GGACCG-----------UGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 41671 | 0.76 | 0.119265 |
Target: 5'- aGGCCGGGCCGAC-CUcGGCAacacCCAGCg -3' miRNA: 3'- gUCGGUCUGGCUGcGGaCCGU----GGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 55943 | 0.75 | 0.129268 |
Target: 5'- gGGCgAGGCCGACGCCgacgccGcGCuCCAGCg -3' miRNA: 3'- gUCGgUCUGGCUGCGGa-----C-CGuGGUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 10727 | 0.75 | 0.132771 |
Target: 5'- gCAGCCAGGCCGACGagauCgagcGGCGCaAGCg -3' miRNA: 3'- -GUCGGUCUGGCUGCg---Ga---CCGUGgUCG- -5' |
|||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 13252 | 0.75 | 0.132771 |
Target: 5'- uGGCCAGGCCGugaccgccaGCGCgCUGGUggccGCCGGUg -3' miRNA: 3'- gUCGGUCUGGC---------UGCG-GACCG----UGGUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home