miRNA display CGI


Results 41 - 60 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 41671 0.76 0.119265
Target:  5'- aGGCCGGGCCGAC-CUcGGCAacacCCAGCg -3'
miRNA:   3'- gUCGGUCUGGCUGcGGaCCGU----GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 51185 0.76 0.116094
Target:  5'- gGGCCauGGACCGcGCGcCCUGGCcguacaucgugGCCAGCa -3'
miRNA:   3'- gUCGG--UCUGGC-UGC-GGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 7702 0.76 0.109987
Target:  5'- --uCCAGGCCGuCGCCgUGGCGCUGGCc -3'
miRNA:   3'- gucGGUCUGGCuGCGG-ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 11926 0.77 0.101388
Target:  5'- aCAGCCAGggccguccGCUGGCcauggucgccaGCCUGGCACCuGCg -3'
miRNA:   3'- -GUCGGUC--------UGGCUG-----------CGGACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 50033 0.79 0.072952
Target:  5'- gCAGCguGGCCGGUGCCUGGCuCCAGg -3'
miRNA:   3'- -GUCGguCUGGCUGCGGACCGuGGUCg -5'
19115 5' -60.2 NC_004684.1 + 50791 0.74 0.170208
Target:  5'- gCGGUCGGugCGcaacaugaagucgucGCGCUUGGC-CCAGCg -3'
miRNA:   3'- -GUCGGUCugGC---------------UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58943 0.73 0.172444
Target:  5'- aCAGCCAGGCCuuGCGCCgGGCccuguccGCCgAGCu -3'
miRNA:   3'- -GUCGGUCUGGc-UGCGGaCCG-------UGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 61320 0.71 0.245191
Target:  5'- -cGCCGGGCCGcCGCCcucggcggcguaggUGGCgGCCAGg -3'
miRNA:   3'- guCGGUCUGGCuGCGG--------------ACCG-UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 25876 0.71 0.242763
Target:  5'- uCGGCCAGGCCGGgcagaacgucagcggUGaCCUgcuguccGGCAUCAGCg -3'
miRNA:   3'- -GUCGGUCUGGCU---------------GC-GGA-------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 17617 0.71 0.240955
Target:  5'- gCGGCCucGGAacCCGuacuggcgcucaGCGCCuUGGCACUAGCa -3'
miRNA:   3'- -GUCGG--UCU--GGC------------UGCGG-ACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 23690 0.72 0.229188
Target:  5'- cCGGaCCAGAgCGugGCCUccaaccugGGCGgCGGCg -3'
miRNA:   3'- -GUC-GGUCUgGCugCGGA--------CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 46292 0.72 0.229188
Target:  5'- gCGGCCGaGCgcguugCGGCGCUUGGCgugcGCCAGCg -3'
miRNA:   3'- -GUCGGUcUG------GCUGCGGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 42208 0.72 0.223489
Target:  5'- gAGCUgguGGCCGAcguggcCGCCggugucGGCACCGGCg -3'
miRNA:   3'- gUCGGu--CUGGCU------GCGGa-----CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 1638 0.72 0.21791
Target:  5'- gCAaCCGGguACCGGCGCCcaagUGGgGCCAGCu -3'
miRNA:   3'- -GUcGGUC--UGGCUGCGG----ACCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 18857 0.72 0.21791
Target:  5'- uGGUCGguGACCggGugGCCgcacucagGGCACCAGCg -3'
miRNA:   3'- gUCGGU--CUGG--CugCGGa-------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47649 0.72 0.206583
Target:  5'- aCGGCCAGugCGGCG-UUGGCcgccuugAUCAGCg -3'
miRNA:   3'- -GUCGGUCugGCUGCgGACCG-------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 6026 0.72 0.201886
Target:  5'- uGGCCuuuAGGCCGccaGCGCCUcgcGGC-CCAGCu -3'
miRNA:   3'- gUCGG---UCUGGC---UGCGGA---CCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 58166 0.73 0.186895
Target:  5'- gAGCCGGugCGACuguGCCgc-CACCAGCa -3'
miRNA:   3'- gUCGGUCugGCUG---CGGaccGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 51814 0.73 0.18212
Target:  5'- aCGGCCAGGCCGcGCGCgCU-GCGCUggAGCa -3'
miRNA:   3'- -GUCGGUCUGGC-UGCG-GAcCGUGG--UCG- -5'
19115 5' -60.2 NC_004684.1 + 42267 0.73 0.177454
Target:  5'- gAGCaAGACCGACaCCUgGGCAauCCAGCa -3'
miRNA:   3'- gUCGgUCUGGCUGcGGA-CCGU--GGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.