Results 61 - 80 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 6026 | 0.72 | 0.201886 |
Target: 5'- uGGCCuuuAGGCCGccaGCGCCUcgcGGC-CCAGCu -3' miRNA: 3'- gUCGG---UCUGGC---UGCGGA---CCGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47649 | 0.72 | 0.206583 |
Target: 5'- aCGGCCAGugCGGCG-UUGGCcgccuugAUCAGCg -3' miRNA: 3'- -GUCGGUCugGCUGCgGACCG-------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 13914 | 0.71 | 0.247025 |
Target: 5'- aCGGCCAGAUCGACaGCuggCUGGCgGCUcGCa -3' miRNA: 3'- -GUCGGUCUGGCUG-CG---GACCG-UGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 8303 | 0.71 | 0.253222 |
Target: 5'- -uGCCGGagugguuggcGCUGACGCCggaagaggUGcGCGCCAGCg -3' miRNA: 3'- guCGGUC----------UGGCUGCGG--------AC-CGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 12609 | 0.71 | 0.253222 |
Target: 5'- -cGCCAcGCCG-CGCaccuugcgGGCACCGGCg -3' miRNA: 3'- guCGGUcUGGCuGCGga------CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 2431 | 0.71 | 0.258907 |
Target: 5'- cCGGCgacaAGGCCGAcaucgccCGCCUGGgCgGCCAGCu -3' miRNA: 3'- -GUCGg---UCUGGCU-------GCGGACC-G-UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 30445 | 0.71 | 0.264048 |
Target: 5'- gAGCUgcuGACCGACcccucguucgcucaGCCUGGCACgcuCGGCu -3' miRNA: 3'- gUCGGu--CUGGCUG--------------CGGACCGUG---GUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 36764 | 0.71 | 0.265346 |
Target: 5'- -cGCCAGggccgcgcccgguGCCGACGCUggucGGCGgCGGCu -3' miRNA: 3'- guCGGUC-------------UGGCUGCGGa---CCGUgGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 40633 | 0.71 | 0.265997 |
Target: 5'- -cGCCGcgcGGCCGACgaacuuggggGCCUGGCcccGCCAGUc -3' miRNA: 3'- guCGGU---CUGGCUG----------CGGACCG---UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 22717 | 0.7 | 0.272578 |
Target: 5'- uGGCCaAGGCCGugG-CUGGCACgC-GCg -3' miRNA: 3'- gUCGG-UCUGGCugCgGACCGUG-GuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 9372 | 0.71 | 0.247025 |
Target: 5'- gAGCCGGACaccgaggaCGACGCC-GGUACCgacgacAGCg -3' miRNA: 3'- gUCGGUCUG--------GCUGCGGaCCGUGG------UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 53056 | 0.71 | 0.247025 |
Target: 5'- cCAGCaCGGugguguCCGACuCgCUGGUACCGGCg -3' miRNA: 3'- -GUCG-GUCu-----GGCUGcG-GACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18857 | 0.72 | 0.21791 |
Target: 5'- uGGUCGguGACCggGugGCCgcacucagGGCACCAGCg -3' miRNA: 3'- gUCGGU--CUGG--CugCGGa-------CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1638 | 0.72 | 0.21791 |
Target: 5'- gCAaCCGGguACCGGCGCCcaagUGGgGCCAGCu -3' miRNA: 3'- -GUcGGUC--UGGCUGCGG----ACCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 42208 | 0.72 | 0.223489 |
Target: 5'- gAGCUgguGGCCGAcguggcCGCCggugucGGCACCGGCg -3' miRNA: 3'- gUCGGu--CUGGCU------GCGGa-----CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 46292 | 0.72 | 0.229188 |
Target: 5'- gCGGCCGaGCgcguugCGGCGCUUGGCgugcGCCAGCg -3' miRNA: 3'- -GUCGGUcUG------GCUGCGGACCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 23690 | 0.72 | 0.229188 |
Target: 5'- cCGGaCCAGAgCGugGCCUccaaccugGGCGgCGGCg -3' miRNA: 3'- -GUC-GGUCUgGCugCGGA--------CCGUgGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 17617 | 0.71 | 0.240955 |
Target: 5'- gCGGCCucGGAacCCGuacuggcgcucaGCGCCuUGGCACUAGCa -3' miRNA: 3'- -GUCGG--UCU--GGC------------UGCGG-ACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 25876 | 0.71 | 0.242763 |
Target: 5'- uCGGCCAGGCCGGgcagaacgucagcggUGaCCUgcuguccGGCAUCAGCg -3' miRNA: 3'- -GUCGGUCUGGCU---------------GC-GGA-------CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 61320 | 0.71 | 0.245191 |
Target: 5'- -cGCCGGGCCGcCGCCcucggcggcguaggUGGCgGCCAGg -3' miRNA: 3'- guCGGUCUGGCuGCGG--------------ACCG-UGGUCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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