miRNA display CGI


Results 81 - 100 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 31205 0.7 0.286131
Target:  5'- gGGCCuGGaaGACGaCCUGGCcgacGCCGGUg -3'
miRNA:   3'- gUCGGuCUggCUGC-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41790 0.7 0.286131
Target:  5'- gCGGCCAGguGCCGACGCCgacguucuucgUGGacCACCcggaGGCg -3'
miRNA:   3'- -GUCGGUC--UGGCUGCGG-----------ACC--GUGG----UCG- -5'
19115 5' -60.2 NC_004684.1 + 4217 0.7 0.293104
Target:  5'- cCAGCCAcGACUGcauGCGCCUgcgcGGCGCgCAGg -3'
miRNA:   3'- -GUCGGU-CUGGC---UGCGGA----CCGUG-GUCg -5'
19115 5' -60.2 NC_004684.1 + 24626 0.7 0.293104
Target:  5'- gCGGCCAGGCCaACGUCUacGCGuuCCGGCg -3'
miRNA:   3'- -GUCGGUCUGGcUGCGGAc-CGU--GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61495 0.7 0.293104
Target:  5'- -cGCgCAGGCggCGGCGCUcgaUGcGCGCCAGCa -3'
miRNA:   3'- guCG-GUCUG--GCUGCGG---AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 63486 0.7 0.293104
Target:  5'- -cGCgAGGCCuccagcuGCGCCU-GCGCCAGCa -3'
miRNA:   3'- guCGgUCUGGc------UGCGGAcCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 11590 0.7 0.299493
Target:  5'- cCAGCCc-GCCGguGCGCCUggacgacGGCACCgAGCu -3'
miRNA:   3'- -GUCGGucUGGC--UGCGGA-------CCGUGG-UCG- -5'
19115 5' -60.2 NC_004684.1 + 22717 0.7 0.272578
Target:  5'- uGGCCaAGGCCGugG-CUGGCACgC-GCg -3'
miRNA:   3'- gUCGG-UCUGGCugCgGACCGUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 40633 0.71 0.265997
Target:  5'- -cGCCGcgcGGCCGACgaacuuggggGCCUGGCcccGCCAGUc -3'
miRNA:   3'- guCGGU---CUGGCUG----------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 36764 0.71 0.265346
Target:  5'- -cGCCAGggccgcgcccgguGCCGACGCUggucGGCGgCGGCu -3'
miRNA:   3'- guCGGUC-------------UGGCUGCGGa---CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25876 0.71 0.242763
Target:  5'- uCGGCCAGGCCGGgcagaacgucagcggUGaCCUgcuguccGGCAUCAGCg -3'
miRNA:   3'- -GUCGGUCUGGCU---------------GC-GGA-------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61320 0.71 0.245191
Target:  5'- -cGCCGGGCCGcCGCCcucggcggcguaggUGGCgGCCAGg -3'
miRNA:   3'- guCGGUCUGGCuGCGG--------------ACCG-UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 53056 0.71 0.247025
Target:  5'- cCAGCaCGGugguguCCGACuCgCUGGUACCGGCg -3'
miRNA:   3'- -GUCG-GUCu-----GGCUGcG-GACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 9372 0.71 0.247025
Target:  5'- gAGCCGGACaccgaggaCGACGCC-GGUACCgacgacAGCg -3'
miRNA:   3'- gUCGGUCUG--------GCUGCGGaCCGUGG------UCG- -5'
19115 5' -60.2 NC_004684.1 + 13914 0.71 0.247025
Target:  5'- aCGGCCAGAUCGACaGCuggCUGGCgGCUcGCa -3'
miRNA:   3'- -GUCGGUCUGGCUG-CG---GACCG-UGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 8303 0.71 0.253222
Target:  5'- -uGCCGGagugguuggcGCUGACGCCggaagaggUGcGCGCCAGCg -3'
miRNA:   3'- guCGGUC----------UGGCUGCGG--------AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12609 0.71 0.253222
Target:  5'- -cGCCAcGCCG-CGCaccuugcgGGCACCGGCg -3'
miRNA:   3'- guCGGUcUGGCuGCGga------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 2431 0.71 0.258907
Target:  5'- cCGGCgacaAGGCCGAcaucgccCGCCUGGgCgGCCAGCu -3'
miRNA:   3'- -GUCGg---UCUGGCU-------GCGGACC-G-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 30445 0.71 0.264048
Target:  5'- gAGCUgcuGACCGACcccucguucgcucaGCCUGGCACgcuCGGCu -3'
miRNA:   3'- gUCGGu--CUGGCUG--------------CGGACCGUG---GUCG- -5'
19115 5' -60.2 NC_004684.1 + 7555 0.7 0.300209
Target:  5'- -uGCUGGACCGGCcCCgggUGGCGCUGGUg -3'
miRNA:   3'- guCGGUCUGGCUGcGG---ACCGUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.