miRNA display CGI


Results 101 - 120 of 313 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 26400 0.69 0.314818
Target:  5'- uGGCCAacgccgccACCGGCGCgCUGGCAgCGGg -3'
miRNA:   3'- gUCGGUc-------UGGCUGCG-GACCGUgGUCg -5'
19115 5' -60.2 NC_004684.1 + 6165 0.69 0.314818
Target:  5'- gCGGCCAgcGugCGGCGgUaGGCACCGGg -3'
miRNA:   3'- -GUCGGU--CugGCUGCgGaCCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 46542 0.69 0.314818
Target:  5'- cCGGUCGGAagaaCGACGCCggugcgcuUGGUGCCGGa -3'
miRNA:   3'- -GUCGGUCUg---GCUGCGG--------ACCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 57796 0.69 0.314818
Target:  5'- gGGCCaAGAccugggaacCCGACcacgGCCUGGUcCCGGCg -3'
miRNA:   3'- gUCGG-UCU---------GGCUG----CGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 19497 0.69 0.314818
Target:  5'- cCAGCCgcugcuguggugGGACgGcACGCaCUGGCucaacGCCAGCu -3'
miRNA:   3'- -GUCGG------------UCUGgC-UGCG-GACCG-----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 24626 0.7 0.293104
Target:  5'- gCGGCCAGGCCaACGUCUacGCGuuCCGGCg -3'
miRNA:   3'- -GUCGGUCUGGcUGCGGAc-CGU--GGUCG- -5'
19115 5' -60.2 NC_004684.1 + 4217 0.7 0.293104
Target:  5'- cCAGCCAcGACUGcauGCGCCUgcgcGGCGCgCAGg -3'
miRNA:   3'- -GUCGGU-CUGGC---UGCGGA----CCGUG-GUCg -5'
19115 5' -60.2 NC_004684.1 + 13914 0.71 0.247025
Target:  5'- aCGGCCAGAUCGACaGCuggCUGGCgGCUcGCa -3'
miRNA:   3'- -GUCGGUCUGGCUG-CG---GACCG-UGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 8303 0.71 0.253222
Target:  5'- -uGCCGGagugguuggcGCUGACGCCggaagaggUGcGCGCCAGCg -3'
miRNA:   3'- guCGGUC----------UGGCUGCGG--------AC-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 12609 0.71 0.253222
Target:  5'- -cGCCAcGCCG-CGCaccuugcgGGCACCGGCg -3'
miRNA:   3'- guCGGUcUGGCuGCGga------CCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 2431 0.71 0.258907
Target:  5'- cCGGCgacaAGGCCGAcaucgccCGCCUGGgCgGCCAGCu -3'
miRNA:   3'- -GUCGg---UCUGGCU-------GCGGACC-G-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 30445 0.71 0.264048
Target:  5'- gAGCUgcuGACCGACcccucguucgcucaGCCUGGCACgcuCGGCu -3'
miRNA:   3'- gUCGGu--CUGGCUG--------------CGGACCGUG---GUCG- -5'
19115 5' -60.2 NC_004684.1 + 36764 0.71 0.265346
Target:  5'- -cGCCAGggccgcgcccgguGCCGACGCUggucGGCGgCGGCu -3'
miRNA:   3'- guCGGUC-------------UGGCUGCGGa---CCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 40633 0.71 0.265997
Target:  5'- -cGCCGcgcGGCCGACgaacuuggggGCCUGGCcccGCCAGUc -3'
miRNA:   3'- guCGGU---CUGGCUG----------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 22717 0.7 0.272578
Target:  5'- uGGCCaAGGCCGugG-CUGGCACgC-GCg -3'
miRNA:   3'- gUCGG-UCUGGCugCgGACCGUG-GuCG- -5'
19115 5' -60.2 NC_004684.1 + 30078 0.7 0.272578
Target:  5'- cCGGCCAcucACCGACGCCgaaugGGC-CC-GCa -3'
miRNA:   3'- -GUCGGUc--UGGCUGCGGa----CCGuGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 1101 0.7 0.279289
Target:  5'- aGGCCGcGAcCCGGCGCaaCUGGCACgAGa -3'
miRNA:   3'- gUCGGU-CU-GGCUGCG--GACCGUGgUCg -5'
19115 5' -60.2 NC_004684.1 + 8856 0.7 0.286131
Target:  5'- gGGCCuGGACgUGuCGCCUGaGCGCCuGCu -3'
miRNA:   3'- gUCGG-UCUG-GCuGCGGAC-CGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 31205 0.7 0.286131
Target:  5'- gGGCCuGGaaGACGaCCUGGCcgacGCCGGUg -3'
miRNA:   3'- gUCGGuCUggCUGC-GGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41790 0.7 0.286131
Target:  5'- gCGGCCAGguGCCGACGCCgacguucuucgUGGacCACCcggaGGCg -3'
miRNA:   3'- -GUCGGUC--UGGCUGCGG-----------ACC--GUGG----UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.