miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 2627 1.11 0.000306
Target:  5'- aCAGCCAGACCGACGCCUGGCACCAGCu -3'
miRNA:   3'- -GUCGGUCUGGCUGCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 31128 0.73 0.190303
Target:  5'- uGGCCAGGCCGcCGgacaccucauagcuCUUGGCcacGCCAGCg -3'
miRNA:   3'- gUCGGUCUGGCuGC--------------GGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47707 0.73 0.19178
Target:  5'- uCGGCCAGGCCu-UGCCgccGCGCCGGUa -3'
miRNA:   3'- -GUCGGUCUGGcuGCGGac-CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41078 0.66 0.518907
Target:  5'- uCGG-CGGcCCGGCgGCCUGGC-CgAGCu -3'
miRNA:   3'- -GUCgGUCuGGCUG-CGGACCGuGgUCG- -5'
19115 5' -60.2 NC_004684.1 + 18278 0.78 0.083728
Target:  5'- --uCCAGGCCGACGCCgacggcgaccugUGGCACCuGCc -3'
miRNA:   3'- gucGGUCUGGCUGCGG------------ACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 29795 0.77 0.098665
Target:  5'- gCGGCCGGgcccgcacgguACCGAUGCCgGGCACCuccAGCu -3'
miRNA:   3'- -GUCGGUC-----------UGGCUGCGGaCCGUGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 21778 0.76 0.122517
Target:  5'- cCGGCaAGACCGACGCgCUGGUGCUGGa -3'
miRNA:   3'- -GUCGgUCUGGCUGCG-GACCGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 59952 0.75 0.135999
Target:  5'- cCAGCCAG-UCGGCgaaacgggucaguGCCUGGUagcGCCAGCg -3'
miRNA:   3'- -GUCGGUCuGGCUG-------------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 55751 0.73 0.176993
Target:  5'- uGGCguGGCCGAUGCCgacGGUcaggcggccgacgGCCAGCu -3'
miRNA:   3'- gUCGguCUGGCUGCGGa--CCG-------------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41891 0.73 0.186895
Target:  5'- aCAGCCGcucGCCGGuCGCCUGGCcCUGGUg -3'
miRNA:   3'- -GUCGGUc--UGGCU-GCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 46746 0.73 0.185451
Target:  5'- -cGCCGGACCucuggggucagcucGACGCgCUGGCGCUcGCc -3'
miRNA:   3'- guCGGUCUGG--------------CUGCG-GACCGUGGuCG- -5'
19115 5' -60.2 NC_004684.1 + 15006 0.74 0.164087
Target:  5'- -uGCCuGACCGcCGCCUGG-AUCGGCu -3'
miRNA:   3'- guCGGuCUGGCuGCGGACCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 45335 0.87 0.01946
Target:  5'- gUAGCCAGACUG-UGCCUGGCGCUGGCu -3'
miRNA:   3'- -GUCGGUCUGGCuGCGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 40938 0.73 0.186895
Target:  5'- gCGGCCAGGCgUGcCGCCguacaccgGGCcACCGGCg -3'
miRNA:   3'- -GUCGGUCUG-GCuGCGGa-------CCG-UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 1916 0.81 0.049279
Target:  5'- -uGCCGGAcCCGGCcugccggGCCUGGUACCGGCg -3'
miRNA:   3'- guCGGUCU-GGCUG-------CGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 4156 0.75 0.143812
Target:  5'- -uGCuCGGGCCGACGCCcGGCAaCgAGCc -3'
miRNA:   3'- guCG-GUCUGGCUGCGGaCCGU-GgUCG- -5'
19115 5' -60.2 NC_004684.1 + 61542 0.73 0.186895
Target:  5'- -uGCCAG-UCGcACGCCUGGUccucgaacaccGCCAGCu -3'
miRNA:   3'- guCGGUCuGGC-UGCGGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 25788 0.73 0.19178
Target:  5'- -cGCCGGACuCGugGCCgaccuGCGCCAGg -3'
miRNA:   3'- guCGGUCUG-GCugCGGac---CGUGGUCg -5'
19115 5' -60.2 NC_004684.1 + 12526 0.8 0.056824
Target:  5'- gGGCCAcGACCGuggcagcaaACGCCUGGUugcuGCCAGCg -3'
miRNA:   3'- gUCGGU-CUGGC---------UGCGGACCG----UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 11929 0.77 0.104181
Target:  5'- uCGGCCAGGCCuucaccGCGCUUGGCgacauagaccACCGGCg -3'
miRNA:   3'- -GUCGGUCUGGc-----UGCGGACCG----------UGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.