Results 21 - 40 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 20036 | 0.72 | 0.201886 |
Target: 5'- -cGCCGGguccuACCGugGCCUGGUGgCCAuGCu -3' miRNA: 3'- guCGGUC-----UGGCugCGGACCGU-GGU-CG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47707 | 0.73 | 0.19178 |
Target: 5'- uCGGCCAGGCCu-UGCCgccGCGCCGGUa -3' miRNA: 3'- -GUCGGUCUGGcuGCGGac-CGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 15006 | 0.74 | 0.164087 |
Target: 5'- -uGCCuGACCGcCGCCUGG-AUCGGCu -3' miRNA: 3'- guCGGuCUGGCuGCGGACCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 12526 | 0.8 | 0.056824 |
Target: 5'- gGGCCAcGACCGuggcagcaaACGCCUGGUugcuGCCAGCg -3' miRNA: 3'- gUCGGU-CUGGC---------UGCGGACCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 52896 | 0.71 | 0.23501 |
Target: 5'- -uGCCAccggcGACCGGCGU--GGUACCGGCa -3' miRNA: 3'- guCGGU-----CUGGCUGCGgaCCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 34726 | 0.72 | 0.222925 |
Target: 5'- gUAGCCAuGCCGcCGCCaGGCcuugccaACCGGCa -3' miRNA: 3'- -GUCGGUcUGGCuGCGGaCCG-------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 31128 | 0.73 | 0.190303 |
Target: 5'- uGGCCAGGCCGcCGgacaccucauagcuCUUGGCcacGCCAGCg -3' miRNA: 3'- gUCGGUCUGGCuGC--------------GGACCG---UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1916 | 0.81 | 0.049279 |
Target: 5'- -uGCCGGAcCCGGCcugccggGCCUGGUACCGGCg -3' miRNA: 3'- guCGGUCU-GGCUG-------CGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18159 | 0.72 | 0.21791 |
Target: 5'- gGGCgAcguGCCGACGCCcGGC-CCGGCa -3' miRNA: 3'- gUCGgUc--UGGCUGCGGaCCGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 45335 | 0.87 | 0.01946 |
Target: 5'- gUAGCCAGACUG-UGCCUGGCGCUGGCu -3' miRNA: 3'- -GUCGGUCUGGCuGCGGACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 25788 | 0.73 | 0.19178 |
Target: 5'- -cGCCGGACuCGugGCCgaccuGCGCCAGg -3' miRNA: 3'- guCGGUCUG-GCugCGGac---CGUGGUCg -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 19313 | 0.72 | 0.20711 |
Target: 5'- -uGCCcGGCCGACGCC-GGaACCGGUg -3' miRNA: 3'- guCGGuCUGGCUGCGGaCCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 40938 | 0.73 | 0.186895 |
Target: 5'- gCGGCCAGGCgUGcCGCCguacaccgGGCcACCGGCg -3' miRNA: 3'- -GUCGGUCUG-GCuGCGGa-------CCG-UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 55751 | 0.73 | 0.176993 |
Target: 5'- uGGCguGGCCGAUGCCgacGGUcaggcggccgacgGCCAGCu -3' miRNA: 3'- gUCGguCUGGCUGCGGa--CCG-------------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 21778 | 0.76 | 0.122517 |
Target: 5'- cCGGCaAGACCGACGCgCUGGUGCUGGa -3' miRNA: 3'- -GUCGgUCUGGCUGCG-GACCGUGGUCg -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 18278 | 0.78 | 0.083728 |
Target: 5'- --uCCAGGCCGACGCCgacggcgaccugUGGCACCuGCc -3' miRNA: 3'- gucGGUCUGGCUGCGG------------ACCGUGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 63688 | 0.71 | 0.253222 |
Target: 5'- cCGGCCAG-CgCGGCgGCgCUGGCgaucuccuGCCAGCg -3' miRNA: 3'- -GUCGGUCuG-GCUG-CG-GACCG--------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 14689 | 0.71 | 0.240955 |
Target: 5'- uGGCgAGGCCGACGggcgcgaggaCCUGGCcaACCGGg -3' miRNA: 3'- gUCGgUCUGGCUGC----------GGACCG--UGGUCg -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 1370 | 0.72 | 0.228038 |
Target: 5'- -cGCCAacacccuGGCCGACGCCaaGGCcgccguugcacugGCCAGCg -3' miRNA: 3'- guCGGU-------CUGGCUGCGGa-CCG-------------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 61449 | 0.72 | 0.223489 |
Target: 5'- gCGGCCAGGuuGGacCGCCcGGUgGCCAGCg -3' miRNA: 3'- -GUCGGUCUggCU--GCGGaCCG-UGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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