miRNA display CGI


Results 61 - 80 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19115 5' -60.2 NC_004684.1 + 14689 0.71 0.240955
Target:  5'- uGGCgAGGCCGACGggcgcgaggaCCUGGCcaACCGGg -3'
miRNA:   3'- gUCGgUCUGGCUGC----------GGACCG--UGGUCg -5'
19115 5' -60.2 NC_004684.1 + 56014 0.71 0.259545
Target:  5'- aGGCCAcGAUgGACGCCaccaccGGCACCucGCg -3'
miRNA:   3'- gUCGGU-CUGgCUGCGGa-----CCGUGGu-CG- -5'
19115 5' -60.2 NC_004684.1 + 29795 0.77 0.098665
Target:  5'- gCGGCCGGgcccgcacgguACCGAUGCCgGGCACCuccAGCu -3'
miRNA:   3'- -GUCGGUC-----------UGGCUGCGGaCCGUGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 59952 0.75 0.135999
Target:  5'- cCAGCCAG-UCGGCgaaacgggucaguGCCUGGUagcGCCAGCg -3'
miRNA:   3'- -GUCGGUCuGGCUG-------------CGGACCG---UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 14296 0.73 0.18212
Target:  5'- uGGCCuugcAGGCCGccgcgcagguguACGCC-GGUACCAGCg -3'
miRNA:   3'- gUCGG----UCUGGC------------UGCGGaCCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61542 0.73 0.186895
Target:  5'- -uGCCAG-UCGcACGCCUGGUccucgaacaccGCCAGCu -3'
miRNA:   3'- guCGGUCuGGC-UGCGGACCG-----------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 61409 0.73 0.19178
Target:  5'- gAGCCAGGCCGGgacuuCGCUcGGCcggucgcucACCGGCg -3'
miRNA:   3'- gUCGGUCUGGCU-----GCGGaCCG---------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 19313 0.72 0.20711
Target:  5'- -uGCCcGGCCGACGCC-GGaACCGGUg -3'
miRNA:   3'- guCGGuCUGGCUGCGGaCCgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 34726 0.72 0.222925
Target:  5'- gUAGCCAuGCCGcCGCCaGGCcuugccaACCGGCa -3'
miRNA:   3'- -GUCGGUcUGGCuGCGGaCCG-------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 47144 0.72 0.227465
Target:  5'- -cGCCGGGCCGgaaguaguaccggcGCGCCaGGCGCacccaGGCg -3'
miRNA:   3'- guCGGUCUGGC--------------UGCGGaCCGUGg----UCG- -5'
19115 5' -60.2 NC_004684.1 + 19760 0.68 0.370114
Target:  5'- uGGCCguccacgacaAGGCCGACGCC-GaGUACCgacGGCg -3'
miRNA:   3'- gUCGG----------UCUGGCUGCGGaC-CGUGG---UCG- -5'
19115 5' -60.2 NC_004684.1 + 4484 0.68 0.361821
Target:  5'- cCGGCCAGGgcCUGGCccGCCgUGGCAaCGGCa -3'
miRNA:   3'- -GUCGGUCU--GGCUG--CGG-ACCGUgGUCG- -5'
19115 5' -60.2 NC_004684.1 + 26171 0.7 0.271914
Target:  5'- aGGCCAGcagcucgcgcaccGCUGGCGUCUGGUcgccuuugAUCAGCa -3'
miRNA:   3'- gUCGGUC-------------UGGCUGCGGACCG--------UGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 2046 0.7 0.279289
Target:  5'- uGGCCcuggGGGCCGcCaucguggccuGCCUGGCGCUGGCc -3'
miRNA:   3'- gUCGG----UCUGGCuG----------CGGACCGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 59201 0.7 0.293104
Target:  5'- -cGCUuGAUCagcuGCGCCUGGC-CCAGCg -3'
miRNA:   3'- guCGGuCUGGc---UGCGGACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41009 0.7 0.300209
Target:  5'- uGGCCAGAUCGcCGCCgacGuuGCCGGUg -3'
miRNA:   3'- gUCGGUCUGGCuGCGGa--CcgUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 16203 0.69 0.314818
Target:  5'- aCGGCCAGGgCG-CGCgguccaUGGC-CCGGCg -3'
miRNA:   3'- -GUCGGUCUgGCuGCGg-----ACCGuGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 5259 0.69 0.324597
Target:  5'- aCGGCgAGgcgugcaacgaguucACCGACGCCaUGuucgccaGCGCCAGCu -3'
miRNA:   3'- -GUCGgUC---------------UGGCUGCGG-AC-------CGUGGUCG- -5'
19115 5' -60.2 NC_004684.1 + 41441 0.69 0.345625
Target:  5'- uGGCCAGcUCGGCGUUgGGCACCuuguuGCc -3'
miRNA:   3'- gUCGGUCuGGCUGCGGaCCGUGGu----CG- -5'
19115 5' -60.2 NC_004684.1 + 873 0.69 0.345625
Target:  5'- -cGCCGGGCCG-CGCUgaaGGCgGCCcGCg -3'
miRNA:   3'- guCGGUCUGGCuGCGGa--CCG-UGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.