Results 81 - 100 of 313 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19115 | 5' | -60.2 | NC_004684.1 | + | 18617 | 0.7 | 0.272578 |
Target: 5'- uCGGCCcGcCCGGCGUC-GGCAaguCCAGCg -3' miRNA: 3'- -GUCGGuCuGGCUGCGGaCCGU---GGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 55449 | 0.7 | 0.286131 |
Target: 5'- -uGCCAGGCUGGCGaCCaUGGC--CAGCg -3' miRNA: 3'- guCGGUCUGGCUGC-GG-ACCGugGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 23776 | 0.7 | 0.293104 |
Target: 5'- uCGGCCAcACCGugGCCgGGCugUucaccGCa -3' miRNA: 3'- -GUCGGUcUGGCugCGGaCCGugGu----CG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 50521 | 0.7 | 0.300209 |
Target: 5'- --aCCAcACCGGCGCagacaCUGGcCACCAGCa -3' miRNA: 3'- gucGGUcUGGCUGCG-----GACC-GUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 9583 | 0.69 | 0.320056 |
Target: 5'- gGGaCCAGGCCGugGUCggguucccaggucuUGGC-CCAGUc -3' miRNA: 3'- gUC-GGUCUGGCugCGG--------------ACCGuGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 41441 | 0.69 | 0.345625 |
Target: 5'- uGGCCAGcUCGGCGUUgGGCACCuuguuGCc -3' miRNA: 3'- gUCGGUCuGGCUGCGGaCCGUGGu----CG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 873 | 0.69 | 0.345625 |
Target: 5'- -cGCCGGGCCG-CGCUgaaGGCgGCCcGCg -3' miRNA: 3'- guCGGUCUGGCuGCGGa--CCG-UGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 47144 | 0.72 | 0.227465 |
Target: 5'- -cGCCGGGCCGgaaguaguaccggcGCGCCaGGCGCacccaGGCg -3' miRNA: 3'- guCGGUCUGGC--------------UGCGGaCCGUGg----UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 34726 | 0.72 | 0.222925 |
Target: 5'- gUAGCCAuGCCGcCGCCaGGCcuugccaACCGGCa -3' miRNA: 3'- -GUCGGUcUGGCuGCGGaCCG-------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 19313 | 0.72 | 0.20711 |
Target: 5'- -uGCCcGGCCGACGCC-GGaACCGGUg -3' miRNA: 3'- guCGGuCUGGCUGCGGaCCgUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 59301 | 0.68 | 0.387087 |
Target: 5'- uGGgCAGGCCGGUGUCggggucgaUGGCGCUGGCa -3' miRNA: 3'- gUCgGUCUGGCUGCGG--------ACCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 8749 | 0.68 | 0.395763 |
Target: 5'- aAGCCAcgGAuaGAgGCCcagcgcGGCACCAGCc -3' miRNA: 3'- gUCGGU--CUggCUgCGGa-----CCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 499 | 0.68 | 0.404565 |
Target: 5'- -cGCCgaAGGCCG-CGCCgaaGGUcgccACCGGCg -3' miRNA: 3'- guCGG--UCUGGCuGCGGa--CCG----UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 20289 | 0.67 | 0.413488 |
Target: 5'- -uGCCGGACCcccGCGuCCcGGCACC-GCc -3' miRNA: 3'- guCGGUCUGGc--UGC-GGaCCGUGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 695 | 0.67 | 0.432615 |
Target: 5'- gCAGCgcaAGACCGcCGCCgggugggaagaccugGGCACC-GCc -3' miRNA: 3'- -GUCGg--UCUGGCuGCGGa--------------CCGUGGuCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 29795 | 0.77 | 0.098665 |
Target: 5'- gCGGCCGGgcccgcacgguACCGAUGCCgGGCACCuccAGCu -3' miRNA: 3'- -GUCGGUC-----------UGGCUGCGGaCCGUGG---UCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 59952 | 0.75 | 0.135999 |
Target: 5'- cCAGCCAG-UCGGCgaaacgggucaguGCCUGGUagcGCCAGCg -3' miRNA: 3'- -GUCGGUCuGGCUG-------------CGGACCG---UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 14296 | 0.73 | 0.18212 |
Target: 5'- uGGCCuugcAGGCCGccgcgcagguguACGCC-GGUACCAGCg -3' miRNA: 3'- gUCGG----UCUGGC------------UGCGGaCCGUGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 61542 | 0.73 | 0.186895 |
Target: 5'- -uGCCAG-UCGcACGCCUGGUccucgaacaccGCCAGCu -3' miRNA: 3'- guCGGUCuGGC-UGCGGACCG-----------UGGUCG- -5' |
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19115 | 5' | -60.2 | NC_004684.1 | + | 61409 | 0.73 | 0.19178 |
Target: 5'- gAGCCAGGCCGGgacuuCGCUcGGCcggucgcucACCGGCg -3' miRNA: 3'- gUCGGUCUGGCU-----GCGGaCCG---------UGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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