miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19116 5' -55.7 NC_004684.1 + 14681 0.66 0.790998
Target:  5'- aGUUCGAC-GCAccgcUGGUCAacccuUCGCcGCAGGg -3'
miRNA:   3'- -CGAGCUGcCGU----ACUAGU-----GGCG-CGUCC- -5'
19116 5' -55.7 NC_004684.1 + 8208 0.66 0.790998
Target:  5'- --aCGACGGCGagcgcuaccUGcUCACCuuCGCAGGc -3'
miRNA:   3'- cgaGCUGCCGU---------ACuAGUGGc-GCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 21379 0.66 0.790998
Target:  5'- aGCUgGACGaCGUGcgCACCGUGgCcGGu -3'
miRNA:   3'- -CGAgCUGCcGUACuaGUGGCGC-GuCC- -5'
19116 5' -55.7 NC_004684.1 + 33079 0.66 0.790998
Target:  5'- uGCUCaaucugucCGGCGUGGcgCuGCCGaCGCAGGc -3'
miRNA:   3'- -CGAGcu------GCCGUACUa-G-UGGC-GCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 875 0.66 0.790998
Target:  5'- ---gGACGGCcagcacGUGAUCcccgcGCCGCGCAa- -3'
miRNA:   3'- cgagCUGCCG------UACUAG-----UGGCGCGUcc -5'
19116 5' -55.7 NC_004684.1 + 27328 0.66 0.790998
Target:  5'- aGCUuugaCGACGGCGguAUCGCCGUggGCAccGGc -3'
miRNA:   3'- -CGA----GCUGCCGUacUAGUGGCG--CGU--CC- -5'
19116 5' -55.7 NC_004684.1 + 64313 0.66 0.790998
Target:  5'- -gUCGugGuGguUGAaCACCGC-CAGGu -3'
miRNA:   3'- cgAGCugC-CguACUaGUGGCGcGUCC- -5'
19116 5' -55.7 NC_004684.1 + 12396 0.66 0.790044
Target:  5'- cGCUCgGugGuGCAcGGUCGCCGUuuaguguucgaccGCAGa -3'
miRNA:   3'- -CGAG-CugC-CGUaCUAGUGGCG-------------CGUCc -5'
19116 5' -55.7 NC_004684.1 + 60164 0.66 0.790044
Target:  5'- uGCUCGGCGGUggcaguguaggggAgcgGGUCggacuuGCCGUGCcGGa -3'
miRNA:   3'- -CGAGCUGCCG-------------Ua--CUAG------UGGCGCGuCC- -5'
19116 5' -55.7 NC_004684.1 + 53112 0.66 0.790044
Target:  5'- aCUCGGCGGUGuUGGUCAgCGUGaagcuguugucgcCGGGa -3'
miRNA:   3'- cGAGCUGCCGU-ACUAGUgGCGC-------------GUCC- -5'
19116 5' -55.7 NC_004684.1 + 22381 0.66 0.785252
Target:  5'- uGC-CGACGGCAUGAccaaggcccgccUgagcgaugaaaucagCAUCGCGCuGGc -3'
miRNA:   3'- -CGaGCUGCCGUACU------------A---------------GUGGCGCGuCC- -5'
19116 5' -55.7 NC_004684.1 + 60521 0.66 0.78139
Target:  5'- -aUCGACcGCAggcUGAucUCGCCGCGCccGGu -3'
miRNA:   3'- cgAGCUGcCGU---ACU--AGUGGCGCGu-CC- -5'
19116 5' -55.7 NC_004684.1 + 28520 0.66 0.78139
Target:  5'- aGCgUGGCGGCGuUGA--ACCGCGCGu- -3'
miRNA:   3'- -CGaGCUGCCGU-ACUagUGGCGCGUcc -5'
19116 5' -55.7 NC_004684.1 + 66057 0.66 0.78139
Target:  5'- cGCgUCGGCGuGCGUGAUCccccaGCCGUGgAa- -3'
miRNA:   3'- -CG-AGCUGC-CGUACUAG-----UGGCGCgUcc -5'
19116 5' -55.7 NC_004684.1 + 6653 0.66 0.78139
Target:  5'- --cCGGCGGCcacccGGUCGCCGgGCAc- -3'
miRNA:   3'- cgaGCUGCCGua---CUAGUGGCgCGUcc -5'
19116 5' -55.7 NC_004684.1 + 29050 0.66 0.771636
Target:  5'- aGCUUG--GGCGUGGUCACCGCc---- -3'
miRNA:   3'- -CGAGCugCCGUACUAGUGGCGcgucc -5'
19116 5' -55.7 NC_004684.1 + 39344 0.66 0.771636
Target:  5'- gGC-CGAccacCGGCAUGAUC-UCGCGCu-- -3'
miRNA:   3'- -CGaGCU----GCCGUACUAGuGGCGCGucc -5'
19116 5' -55.7 NC_004684.1 + 24898 0.66 0.771636
Target:  5'- gGCUacgaGAUGGCcgccgccgcGAUCAgCGCGCuGGg -3'
miRNA:   3'- -CGAg---CUGCCGua-------CUAGUgGCGCGuCC- -5'
19116 5' -55.7 NC_004684.1 + 63106 0.66 0.771636
Target:  5'- gGCgaccCGGCGGCAUuGUCuCCGgGUAGa -3'
miRNA:   3'- -CGa---GCUGCCGUAcUAGuGGCgCGUCc -5'
19116 5' -55.7 NC_004684.1 + 11927 0.66 0.771636
Target:  5'- cCUCGGCcaGGCcu--UCACCGCGCuuGGc -3'
miRNA:   3'- cGAGCUG--CCGuacuAGUGGCGCGu-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.