miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19116 5' -55.7 NC_004684.1 + 5207 0.71 0.457145
Target:  5'- cGCUCGACcgugcuccaggugaGGcCAUGGUguCCGCGCGcGGc -3'
miRNA:   3'- -CGAGCUG--------------CC-GUACUAguGGCGCGU-CC- -5'
19116 5' -55.7 NC_004684.1 + 28812 0.73 0.360652
Target:  5'- uGCUCGACGGUGUGA---CCGgGCGGu -3'
miRNA:   3'- -CGAGCUGCCGUACUaguGGCgCGUCc -5'
19116 5' -55.7 NC_004684.1 + 11664 0.73 0.369051
Target:  5'- aGCaCGGCGGCcaacGUGAcCGCCGCGCAa- -3'
miRNA:   3'- -CGaGCUGCCG----UACUaGUGGCGCGUcc -5'
19116 5' -55.7 NC_004684.1 + 61467 0.73 0.369051
Target:  5'- uGCUCG-CGuGCcaccuagucgAUG-UCGCCGCGCAGGc -3'
miRNA:   3'- -CGAGCuGC-CG----------UACuAGUGGCGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 23545 0.73 0.395037
Target:  5'- cCUCGGCGGCAUcGGUCGCgGC-CuGGa -3'
miRNA:   3'- cGAGCUGCCGUA-CUAGUGgCGcGuCC- -5'
19116 5' -55.7 NC_004684.1 + 11994 0.72 0.43147
Target:  5'- --cCGACGGCAUGA-C-CC-CGCAGGa -3'
miRNA:   3'- cgaGCUGCCGUACUaGuGGcGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 59388 0.72 0.43147
Target:  5'- cGCcCGGCGGCAcaGUCGCUGCacuuGCAGGu -3'
miRNA:   3'- -CGaGCUGCCGUacUAGUGGCG----CGUCC- -5'
19116 5' -55.7 NC_004684.1 + 61334 0.72 0.43147
Target:  5'- cCUCGGCGGCGUaGGUgGCgGC-CAGGu -3'
miRNA:   3'- cGAGCUGCCGUA-CUAgUGgCGcGUCC- -5'
19116 5' -55.7 NC_004684.1 + 38395 0.72 0.439936
Target:  5'- cGCUacCGGCGGCGUGGagACCGagaaccuggccgaUGCGGGg -3'
miRNA:   3'- -CGA--GCUGCCGUACUagUGGC-------------GCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 31091 0.74 0.328409
Target:  5'- cGC-CGAgGGCuggcagGA-CGCCGCGCAGGc -3'
miRNA:   3'- -CGaGCUgCCGua----CUaGUGGCGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 20339 0.74 0.320689
Target:  5'- -aUCGGCGucgcccgguGCAccGUCACCGCGCAGGc -3'
miRNA:   3'- cgAGCUGC---------CGUacUAGUGGCGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 6171 0.74 0.320689
Target:  5'- aGCgugCGGCGGUAgg--CACCGgGCAGGu -3'
miRNA:   3'- -CGa--GCUGCCGUacuaGUGGCgCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 64542 0.8 0.137445
Target:  5'- gGCUCGGCGGCcuUGGUgACCggguugguGCGCAGGa -3'
miRNA:   3'- -CGAGCUGCCGu-ACUAgUGG--------CGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 39383 0.79 0.170275
Target:  5'- cCUUGuACGGCccGAUCACCGCGuCGGGu -3'
miRNA:   3'- cGAGC-UGCCGuaCUAGUGGCGC-GUCC- -5'
19116 5' -55.7 NC_004684.1 + 22228 0.76 0.238603
Target:  5'- uGCgCGACGGCAcccgcgcGAUCAaCGCGCAGGc -3'
miRNA:   3'- -CGaGCUGCCGUa------CUAGUgGCGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 66656 0.76 0.263827
Target:  5'- cCUCGGCGGCGgcccGGUCACCG-GCGGu -3'
miRNA:   3'- cGAGCUGCCGUa---CUAGUGGCgCGUCc -5'
19116 5' -55.7 NC_004684.1 + 6420 0.75 0.283438
Target:  5'- aGCUCGGCGGCggcGUGAacgccuucgcgcuUgGCCgagGCGCAGGg -3'
miRNA:   3'- -CGAGCUGCCG---UACU-------------AgUGG---CGCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 6775 0.75 0.284135
Target:  5'- uGCUCGACGGCA---UCGCCgGUGCAcuGGa -3'
miRNA:   3'- -CGAGCUGCCGUacuAGUGG-CGCGU--CC- -5'
19116 5' -55.7 NC_004684.1 + 61800 0.75 0.291173
Target:  5'- aGCUCGGCcccgucGGCAggcgGGUCGCCuuGCAGGc -3'
miRNA:   3'- -CGAGCUG------CCGUa---CUAGUGGcgCGUCC- -5'
19116 5' -55.7 NC_004684.1 + 13966 0.75 0.305658
Target:  5'- cGCU-GACGGCAgucgCGCgGCGCAGGc -3'
miRNA:   3'- -CGAgCUGCCGUacuaGUGgCGCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.