miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19117 3' -54.8 NC_004684.1 + 65810 0.66 0.795741
Target:  5'- uGCACCGGGCaggugaCCcGGAGGCAcCgGCGg -3'
miRNA:   3'- -UGUGGCUUGaa----GGuCCUCCGUaG-CGU- -5'
19117 3' -54.8 NC_004684.1 + 58787 0.66 0.785982
Target:  5'- uGCACCGGGCUUgUucGAGGCcaccggCGCGu -3'
miRNA:   3'- -UGUGGCUUGAAgGucCUCCGua----GCGU- -5'
19117 3' -54.8 NC_004684.1 + 7956 0.66 0.785982
Target:  5'- cACACCGGugggcaagGCcgCCAGGcGGCcgUGCGc -3'
miRNA:   3'- -UGUGGCU--------UGaaGGUCCuCCGuaGCGU- -5'
19117 3' -54.8 NC_004684.1 + 52724 0.66 0.785982
Target:  5'- uGCGUCGAACUgaaCCGGGAGcGCAcUGCu -3'
miRNA:   3'- -UGUGGCUUGAa--GGUCCUC-CGUaGCGu -5'
19117 3' -54.8 NC_004684.1 + 24287 0.66 0.776064
Target:  5'- uCACCGAGCUgCCGGaAGGCGagGUc -3'
miRNA:   3'- uGUGGCUUGAaGGUCcUCCGUagCGu -5'
19117 3' -54.8 NC_004684.1 + 11473 0.66 0.776064
Target:  5'- uCACCGAggACggCCGGGuguucGGGCAcaUCGCc -3'
miRNA:   3'- uGUGGCU--UGaaGGUCC-----UCCGU--AGCGu -5'
19117 3' -54.8 NC_004684.1 + 30063 0.66 0.776064
Target:  5'- uGCGgCGGGCuUUCCAGGuAGGCAaUgGCc -3'
miRNA:   3'- -UGUgGCUUG-AAGGUCC-UCCGU-AgCGu -5'
19117 3' -54.8 NC_004684.1 + 57314 0.66 0.776064
Target:  5'- aGCACCcGGCgcaCCAcGGGGGUGUCGUc -3'
miRNA:   3'- -UGUGGcUUGaa-GGU-CCUCCGUAGCGu -5'
19117 3' -54.8 NC_004684.1 + 3955 0.66 0.776064
Target:  5'- cGCACCGGACgaccccggCCAGGucauccuGGCcgGUgGCAg -3'
miRNA:   3'- -UGUGGCUUGaa------GGUCCu------CCG--UAgCGU- -5'
19117 3' -54.8 NC_004684.1 + 24676 0.66 0.770041
Target:  5'- gGCGgUGAGgUUCCAGGccugccgaccauuccAGGCGUCaGCGa -3'
miRNA:   3'- -UGUgGCUUgAAGGUCC---------------UCCGUAG-CGU- -5'
19117 3' -54.8 NC_004684.1 + 39155 0.66 0.765998
Target:  5'- cCACCGcGCUgugcUCCGGGuGGGCGgccagguagCGCAg -3'
miRNA:   3'- uGUGGCuUGA----AGGUCC-UCCGUa--------GCGU- -5'
19117 3' -54.8 NC_004684.1 + 30702 0.66 0.765998
Target:  5'- cACGCCGGuggGCacgCCAacgaugcuGGcGGGCAUCGCAu -3'
miRNA:   3'- -UGUGGCU---UGaa-GGU--------CC-UCCGUAGCGU- -5'
19117 3' -54.8 NC_004684.1 + 47906 0.66 0.765998
Target:  5'- aGCAgCGG-CUggcUCCAGGGGcGCAugUCGCGc -3'
miRNA:   3'- -UGUgGCUuGA---AGGUCCUC-CGU--AGCGU- -5'
19117 3' -54.8 NC_004684.1 + 10027 0.66 0.755795
Target:  5'- cGCGCCGA----CCGGGAGcGCAucaUCGCc -3'
miRNA:   3'- -UGUGGCUugaaGGUCCUC-CGU---AGCGu -5'
19117 3' -54.8 NC_004684.1 + 55880 0.66 0.755795
Target:  5'- cCACCGAGCgugCCGGGAGucccaGCAg-GCGa -3'
miRNA:   3'- uGUGGCUUGaa-GGUCCUC-----CGUagCGU- -5'
19117 3' -54.8 NC_004684.1 + 46744 0.66 0.749613
Target:  5'- uGCGCCGGACcUCUGGGGucagcucgacgcgcuGGCGcUCGCc -3'
miRNA:   3'- -UGUGGCUUGaAGGUCCU---------------CCGU-AGCGu -5'
19117 3' -54.8 NC_004684.1 + 31090 0.66 0.745467
Target:  5'- cCGCCGAggGCUggCAGGAcGCcgCGCAg -3'
miRNA:   3'- uGUGGCU--UGAagGUCCUcCGuaGCGU- -5'
19117 3' -54.8 NC_004684.1 + 13865 0.66 0.745467
Target:  5'- cGCGCCGAcCUggccaUUCAGGAgGGUGUCGaCAc -3'
miRNA:   3'- -UGUGGCUuGA-----AGGUCCU-CCGUAGC-GU- -5'
19117 3' -54.8 NC_004684.1 + 10678 0.67 0.735025
Target:  5'- cACACCGAACgccucaacggUCGGGAcgcgguGGC-UCGCAa -3'
miRNA:   3'- -UGUGGCUUGaa--------GGUCCU------CCGuAGCGU- -5'
19117 3' -54.8 NC_004684.1 + 45274 0.67 0.735025
Target:  5'- cGCGCUGAGCUgCCAGGcgcugcuGGU-UCGCGc -3'
miRNA:   3'- -UGUGGCUUGAaGGUCCu------CCGuAGCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.