Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19117 | 3' | -54.8 | NC_004684.1 | + | 1871 | 1.08 | 0.001523 |
Target: 5'- cACACCGAACUUCCAGGAGGCAUCGCAu -3' miRNA: 3'- -UGUGGCUUGAAGGUCCUCCGUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 19549 | 0.74 | 0.347941 |
Target: 5'- uGCGCCGGGCggugCCAGGucuccgggccuGGCGUCGUg -3' miRNA: 3'- -UGUGGCUUGaa--GGUCCu----------CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 44886 | 0.73 | 0.382329 |
Target: 5'- cGCACCGGACggaaCCAGGuGGCA-CGUu -3' miRNA: 3'- -UGUGGCUUGaa--GGUCCuCCGUaGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 60858 | 0.72 | 0.409564 |
Target: 5'- gGCGgCGAugUcggCCGGGAGGCGaugCGCAc -3' miRNA: 3'- -UGUgGCUugAa--GGUCCUCCGUa--GCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 52528 | 0.72 | 0.418907 |
Target: 5'- -aGCCGGugUggagCCAGGAGGUGUCcgGCAc -3' miRNA: 3'- ugUGGCUugAa---GGUCCUCCGUAG--CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 15814 | 0.71 | 0.467482 |
Target: 5'- cACGCCGAGCgacCCGGuGGcgcgcGGCAUCGCc -3' miRNA: 3'- -UGUGGCUUGaa-GGUC-CU-----CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 60564 | 0.71 | 0.49798 |
Target: 5'- cGCGCCGuaggccAGCUccUCCAGGccgacGGCGUCGUAg -3' miRNA: 3'- -UGUGGC------UUGA--AGGUCCu----CCGUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 64937 | 0.71 | 0.49798 |
Target: 5'- cACGCCGAGCUggccgcCCAGGcGGGCgaugucggccuuGUCGCc -3' miRNA: 3'- -UGUGGCUUGAa-----GGUCC-UCCG------------UAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 26858 | 0.7 | 0.508344 |
Target: 5'- aGCACC-AGCgagCAGGAGGCggCGCAg -3' miRNA: 3'- -UGUGGcUUGaagGUCCUCCGuaGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 4117 | 0.69 | 0.583054 |
Target: 5'- uACGCCcGGCggcuccaggUCCAGGAGcGCAUCGg- -3' miRNA: 3'- -UGUGGcUUGa--------AGGUCCUC-CGUAGCgu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 41633 | 0.69 | 0.593951 |
Target: 5'- -aGCCGGACg-CCAGGccGGGgAUCGCGc -3' miRNA: 3'- ugUGGCUUGaaGGUCC--UCCgUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 59768 | 0.69 | 0.60488 |
Target: 5'- cACGgCGAGCUggcucucgaccggCCAGGAGGCgaacaccgccagcauGUCGCu -3' miRNA: 3'- -UGUgGCUUGAa------------GGUCCUCCG---------------UAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 53468 | 0.69 | 0.615832 |
Target: 5'- aGCACCGGcaACgggugguuggCCAGGuAGGCGUCGa- -3' miRNA: 3'- -UGUGGCU--UGaa--------GGUCC-UCCGUAGCgu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 67239 | 0.68 | 0.626798 |
Target: 5'- uCACCGGuucgaccgGCguuUCCGGGcuGGCGUCGCu -3' miRNA: 3'- uGUGGCU--------UGa--AGGUCCu-CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30630 | 0.68 | 0.63777 |
Target: 5'- gGCACCGGGCgcggcCCuGGcGGCGUCaGCGc -3' miRNA: 3'- -UGUGGCUUGaa---GGuCCuCCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 47929 | 0.68 | 0.63777 |
Target: 5'- cCACCuucuGCUUCCAGGccuugguGGCGUCgGCAc -3' miRNA: 3'- uGUGGcu--UGAAGGUCCu------CCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 59691 | 0.68 | 0.648735 |
Target: 5'- uGCGCCGAGCUgCgCGGGGuGCGggugCGCAu -3' miRNA: 3'- -UGUGGCUUGAaG-GUCCUcCGUa---GCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 9064 | 0.68 | 0.659686 |
Target: 5'- cCACCGGGCgcgCCAuGAcccGGCGUCGCc -3' miRNA: 3'- uGUGGCUUGaa-GGUcCU---CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 28674 | 0.67 | 0.713844 |
Target: 5'- -gGuuGAACgugUCCAGGAGGaUGUUGCu -3' miRNA: 3'- ugUggCUUGa--AGGUCCUCC-GUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 57557 | 0.67 | 0.713844 |
Target: 5'- cCGCCGAGCUgcgCCGGuuGGCcgacAUCGCc -3' miRNA: 3'- uGUGGCUUGAa--GGUCcuCCG----UAGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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