miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19117 3' -54.8 NC_004684.1 + 39155 0.66 0.765998
Target:  5'- cCACCGcGCUgugcUCCGGGuGGGCGgccagguagCGCAg -3'
miRNA:   3'- uGUGGCuUGA----AGGUCC-UCCGUa--------GCGU- -5'
19117 3' -54.8 NC_004684.1 + 41633 0.69 0.593951
Target:  5'- -aGCCGGACg-CCAGGccGGGgAUCGCGc -3'
miRNA:   3'- ugUGGCUUGaaGGUCC--UCCgUAGCGU- -5'
19117 3' -54.8 NC_004684.1 + 44886 0.73 0.382329
Target:  5'- cGCACCGGACggaaCCAGGuGGCA-CGUu -3'
miRNA:   3'- -UGUGGCUUGaa--GGUCCuCCGUaGCGu -5'
19117 3' -54.8 NC_004684.1 + 45274 0.67 0.735025
Target:  5'- cGCGCUGAGCUgCCAGGcgcugcuGGU-UCGCGc -3'
miRNA:   3'- -UGUGGCUUGAaGGUCCu------CCGuAGCGU- -5'
19117 3' -54.8 NC_004684.1 + 46744 0.66 0.749613
Target:  5'- uGCGCCGGACcUCUGGGGucagcucgacgcgcuGGCGcUCGCc -3'
miRNA:   3'- -UGUGGCUUGaAGGUCCU---------------CCGU-AGCGu -5'
19117 3' -54.8 NC_004684.1 + 47906 0.66 0.765998
Target:  5'- aGCAgCGG-CUggcUCCAGGGGcGCAugUCGCGc -3'
miRNA:   3'- -UGUgGCUuGA---AGGUCCUC-CGU--AGCGU- -5'
19117 3' -54.8 NC_004684.1 + 47929 0.68 0.63777
Target:  5'- cCACCuucuGCUUCCAGGccuugguGGCGUCgGCAc -3'
miRNA:   3'- uGUGGcu--UGAAGGUCCu------CCGUAG-CGU- -5'
19117 3' -54.8 NC_004684.1 + 52528 0.72 0.418907
Target:  5'- -aGCCGGugUggagCCAGGAGGUGUCcgGCAc -3'
miRNA:   3'- ugUGGCUugAa---GGUCCUCCGUAG--CGU- -5'
19117 3' -54.8 NC_004684.1 + 52724 0.66 0.785982
Target:  5'- uGCGUCGAACUgaaCCGGGAGcGCAcUGCu -3'
miRNA:   3'- -UGUGGCUUGAa--GGUCCUC-CGUaGCGu -5'
19117 3' -54.8 NC_004684.1 + 53468 0.69 0.615832
Target:  5'- aGCACCGGcaACgggugguuggCCAGGuAGGCGUCGa- -3'
miRNA:   3'- -UGUGGCU--UGaa--------GGUCC-UCCGUAGCgu -5'
19117 3' -54.8 NC_004684.1 + 55880 0.66 0.755795
Target:  5'- cCACCGAGCgugCCGGGAGucccaGCAg-GCGa -3'
miRNA:   3'- uGUGGCUUGaa-GGUCCUC-----CGUagCGU- -5'
19117 3' -54.8 NC_004684.1 + 57314 0.66 0.776064
Target:  5'- aGCACCcGGCgcaCCAcGGGGGUGUCGUc -3'
miRNA:   3'- -UGUGGcUUGaa-GGU-CCUCCGUAGCGu -5'
19117 3' -54.8 NC_004684.1 + 57557 0.67 0.713844
Target:  5'- cCGCCGAGCUgcgCCGGuuGGCcgacAUCGCc -3'
miRNA:   3'- uGUGGCUUGAa--GGUCcuCCG----UAGCGu -5'
19117 3' -54.8 NC_004684.1 + 58787 0.66 0.785982
Target:  5'- uGCACCGGGCUUgUucGAGGCcaccggCGCGu -3'
miRNA:   3'- -UGUGGCUUGAAgGucCUCCGua----GCGU- -5'
19117 3' -54.8 NC_004684.1 + 59691 0.68 0.648735
Target:  5'- uGCGCCGAGCUgCgCGGGGuGCGggugCGCAu -3'
miRNA:   3'- -UGUGGCUUGAaG-GUCCUcCGUa---GCGU- -5'
19117 3' -54.8 NC_004684.1 + 59768 0.69 0.60488
Target:  5'- cACGgCGAGCUggcucucgaccggCCAGGAGGCgaacaccgccagcauGUCGCu -3'
miRNA:   3'- -UGUgGCUUGAa------------GGUCCUCCG---------------UAGCGu -5'
19117 3' -54.8 NC_004684.1 + 60564 0.71 0.49798
Target:  5'- cGCGCCGuaggccAGCUccUCCAGGccgacGGCGUCGUAg -3'
miRNA:   3'- -UGUGGC------UUGA--AGGUCCu----CCGUAGCGU- -5'
19117 3' -54.8 NC_004684.1 + 60646 0.67 0.72448
Target:  5'- uGCACCcGACggcUCCGGGccagccAGGUGUCGCc -3'
miRNA:   3'- -UGUGGcUUGa--AGGUCC------UCCGUAGCGu -5'
19117 3' -54.8 NC_004684.1 + 60858 0.72 0.409564
Target:  5'- gGCGgCGAugUcggCCGGGAGGCGaugCGCAc -3'
miRNA:   3'- -UGUgGCUugAa--GGUCCUCCGUa--GCGU- -5'
19117 3' -54.8 NC_004684.1 + 64173 0.67 0.72448
Target:  5'- cGCACCu--CUUCCAGGcgcacgucGGCGUUGCc -3'
miRNA:   3'- -UGUGGcuuGAAGGUCCu-------CCGUAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.