Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19117 | 3' | -54.8 | NC_004684.1 | + | 44886 | 0.73 | 0.382329 |
Target: 5'- cGCACCGGACggaaCCAGGuGGCA-CGUu -3' miRNA: 3'- -UGUGGCUUGaa--GGUCCuCCGUaGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 41633 | 0.69 | 0.593951 |
Target: 5'- -aGCCGGACg-CCAGGccGGGgAUCGCGc -3' miRNA: 3'- ugUGGCUUGaaGGUCC--UCCgUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 39155 | 0.66 | 0.765998 |
Target: 5'- cCACCGcGCUgugcUCCGGGuGGGCGgccagguagCGCAg -3' miRNA: 3'- uGUGGCuUGA----AGGUCC-UCCGUa--------GCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 31090 | 0.66 | 0.745467 |
Target: 5'- cCGCCGAggGCUggCAGGAcGCcgCGCAg -3' miRNA: 3'- uGUGGCU--UGAagGUCCUcCGuaGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30702 | 0.66 | 0.765998 |
Target: 5'- cACGCCGGuggGCacgCCAacgaugcuGGcGGGCAUCGCAu -3' miRNA: 3'- -UGUGGCU---UGaa-GGU--------CC-UCCGUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30630 | 0.68 | 0.63777 |
Target: 5'- gGCACCGGGCgcggcCCuGGcGGCGUCaGCGc -3' miRNA: 3'- -UGUGGCUUGaa---GGuCCuCCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30063 | 0.66 | 0.776064 |
Target: 5'- uGCGgCGGGCuUUCCAGGuAGGCAaUgGCc -3' miRNA: 3'- -UGUgGCUUG-AAGGUCC-UCCGU-AgCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 28674 | 0.67 | 0.713844 |
Target: 5'- -gGuuGAACgugUCCAGGAGGaUGUUGCu -3' miRNA: 3'- ugUggCUUGa--AGGUCCUCC-GUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 27845 | 0.67 | 0.735025 |
Target: 5'- gGCACCGAGCgcgcugugcaCgCAGGAGuGCcgGUCGCu -3' miRNA: 3'- -UGUGGCUUGaa--------G-GUCCUC-CG--UAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 26858 | 0.7 | 0.508344 |
Target: 5'- aGCACC-AGCgagCAGGAGGCggCGCAg -3' miRNA: 3'- -UGUGGcUUGaagGUCCUCCGuaGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 24676 | 0.66 | 0.770041 |
Target: 5'- gGCGgUGAGgUUCCAGGccugccgaccauuccAGGCGUCaGCGa -3' miRNA: 3'- -UGUgGCUUgAAGGUCC---------------UCCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 24287 | 0.66 | 0.776064 |
Target: 5'- uCACCGAGCUgCCGGaAGGCGagGUc -3' miRNA: 3'- uGUGGCUUGAaGGUCcUCCGUagCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 19549 | 0.74 | 0.347941 |
Target: 5'- uGCGCCGGGCggugCCAGGucuccgggccuGGCGUCGUg -3' miRNA: 3'- -UGUGGCUUGaa--GGUCCu----------CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 15814 | 0.71 | 0.467482 |
Target: 5'- cACGCCGAGCgacCCGGuGGcgcgcGGCAUCGCc -3' miRNA: 3'- -UGUGGCUUGaa-GGUC-CU-----CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 13865 | 0.66 | 0.745467 |
Target: 5'- cGCGCCGAcCUggccaUUCAGGAgGGUGUCGaCAc -3' miRNA: 3'- -UGUGGCUuGA-----AGGUCCU-CCGUAGC-GU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 11473 | 0.66 | 0.776064 |
Target: 5'- uCACCGAggACggCCGGGuguucGGGCAcaUCGCc -3' miRNA: 3'- uGUGGCU--UGaaGGUCC-----UCCGU--AGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 10678 | 0.67 | 0.735025 |
Target: 5'- cACACCGAACgccucaacggUCGGGAcgcgguGGC-UCGCAa -3' miRNA: 3'- -UGUGGCUUGaa--------GGUCCU------CCGuAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 10027 | 0.66 | 0.755795 |
Target: 5'- cGCGCCGA----CCGGGAGcGCAucaUCGCc -3' miRNA: 3'- -UGUGGCUugaaGGUCCUC-CGU---AGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 9064 | 0.68 | 0.659686 |
Target: 5'- cCACCGGGCgcgCCAuGAcccGGCGUCGCc -3' miRNA: 3'- uGUGGCUUGaa-GGUcCU---CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 7956 | 0.66 | 0.785982 |
Target: 5'- cACACCGGugggcaagGCcgCCAGGcGGCcgUGCGc -3' miRNA: 3'- -UGUGGCU--------UGaaGGUCCuCCGuaGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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