Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19117 | 3' | -54.8 | NC_004684.1 | + | 59768 | 0.69 | 0.60488 |
Target: 5'- cACGgCGAGCUggcucucgaccggCCAGGAGGCgaacaccgccagcauGUCGCu -3' miRNA: 3'- -UGUgGCUUGAa------------GGUCCUCCG---------------UAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 53468 | 0.69 | 0.615832 |
Target: 5'- aGCACCGGcaACgggugguuggCCAGGuAGGCGUCGa- -3' miRNA: 3'- -UGUGGCU--UGaa--------GGUCC-UCCGUAGCgu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 47929 | 0.68 | 0.63777 |
Target: 5'- cCACCuucuGCUUCCAGGccuugguGGCGUCgGCAc -3' miRNA: 3'- uGUGGcu--UGAAGGUCCu------CCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 59691 | 0.68 | 0.648735 |
Target: 5'- uGCGCCGAGCUgCgCGGGGuGCGggugCGCAu -3' miRNA: 3'- -UGUGGCUUGAaG-GUCCUcCGUa---GCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 45274 | 0.67 | 0.735025 |
Target: 5'- cGCGCUGAGCUgCCAGGcgcugcuGGU-UCGCGc -3' miRNA: 3'- -UGUGGCUUGAaGGUCCu------CCGuAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 46744 | 0.66 | 0.749613 |
Target: 5'- uGCGCCGGACcUCUGGGGucagcucgacgcgcuGGCGcUCGCc -3' miRNA: 3'- -UGUGGCUUGaAGGUCCU---------------CCGU-AGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 55880 | 0.66 | 0.755795 |
Target: 5'- cCACCGAGCgugCCGGGAGucccaGCAg-GCGa -3' miRNA: 3'- uGUGGCUUGaa-GGUCCUC-----CGUagCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 39155 | 0.66 | 0.765998 |
Target: 5'- cCACCGcGCUgugcUCCGGGuGGGCGgccagguagCGCAg -3' miRNA: 3'- uGUGGCuUGA----AGGUCC-UCCGUa--------GCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 47906 | 0.66 | 0.765998 |
Target: 5'- aGCAgCGG-CUggcUCCAGGGGcGCAugUCGCGc -3' miRNA: 3'- -UGUgGCUuGA---AGGUCCUC-CGU--AGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30063 | 0.66 | 0.776064 |
Target: 5'- uGCGgCGGGCuUUCCAGGuAGGCAaUgGCc -3' miRNA: 3'- -UGUgGCUUG-AAGGUCC-UCCGU-AgCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 57314 | 0.66 | 0.776064 |
Target: 5'- aGCACCcGGCgcaCCAcGGGGGUGUCGUc -3' miRNA: 3'- -UGUGGcUUGaa-GGU-CCUCCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 60646 | 0.67 | 0.72448 |
Target: 5'- uGCACCcGACggcUCCGGGccagccAGGUGUCGCc -3' miRNA: 3'- -UGUGGcUUGa--AGGUCC------UCCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 28674 | 0.67 | 0.713844 |
Target: 5'- -gGuuGAACgugUCCAGGAGGaUGUUGCu -3' miRNA: 3'- ugUggCUUGa--AGGUCCUCC-GUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 9064 | 0.68 | 0.659686 |
Target: 5'- cCACCGGGCgcgCCAuGAcccGGCGUCGCc -3' miRNA: 3'- uGUGGCUUGaa-GGUcCU---CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 30630 | 0.68 | 0.63777 |
Target: 5'- gGCACCGGGCgcggcCCuGGcGGCGUCaGCGc -3' miRNA: 3'- -UGUGGCUUGaa---GGuCCuCCGUAG-CGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 67239 | 0.68 | 0.626798 |
Target: 5'- uCACCGGuucgaccgGCguuUCCGGGcuGGCGUCGCu -3' miRNA: 3'- uGUGGCU--------UGa--AGGUCCu-CCGUAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 41633 | 0.69 | 0.593951 |
Target: 5'- -aGCCGGACg-CCAGGccGGGgAUCGCGc -3' miRNA: 3'- ugUGGCUUGaaGGUCC--UCCgUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 64937 | 0.71 | 0.49798 |
Target: 5'- cACGCCGAGCUggccgcCCAGGcGGGCgaugucggccuuGUCGCc -3' miRNA: 3'- -UGUGGCUUGAa-----GGUCC-UCCG------------UAGCGu -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 60564 | 0.71 | 0.49798 |
Target: 5'- cGCGCCGuaggccAGCUccUCCAGGccgacGGCGUCGUAg -3' miRNA: 3'- -UGUGGC------UUGA--AGGUCCu----CCGUAGCGU- -5' |
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19117 | 3' | -54.8 | NC_004684.1 | + | 58787 | 0.66 | 0.785982 |
Target: 5'- uGCACCGGGCUUgUucGAGGCcaccggCGCGu -3' miRNA: 3'- -UGUGGCUUGAAgGucCUCCGua----GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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