miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19117 5' -65.3 NC_004684.1 + 23883 0.66 0.303801
Target:  5'- cUCCCGCcCCUGCCGcugcACCUGcuGCCg- -3'
miRNA:   3'- uAGGGCGuGGACGGCc---UGGGC--CGGac -5'
19117 5' -65.3 NC_004684.1 + 39296 0.66 0.303801
Target:  5'- --aCCGCACCacccggUGCgGGucgcgcggcgGCCCGGCCa- -3'
miRNA:   3'- uagGGCGUGG------ACGgCC----------UGGGCCGGac -5'
19117 5' -65.3 NC_004684.1 + 865 0.66 0.303801
Target:  5'- --gCCGUGCCcGCCGGGCCgcgcugaaggCGGCCc- -3'
miRNA:   3'- uagGGCGUGGaCGGCCUGG----------GCCGGac -5'
19117 5' -65.3 NC_004684.1 + 13478 0.66 0.303801
Target:  5'- -cCCCGCACCUcGCCuGACCCccGUCa- -3'
miRNA:   3'- uaGGGCGUGGA-CGGcCUGGGc-CGGac -5'
19117 5' -65.3 NC_004684.1 + 21167 0.66 0.303098
Target:  5'- --gCCGCAgCUGUCcacgaggGGACUCGGCCa- -3'
miRNA:   3'- uagGGCGUgGACGG-------CCUGGGCCGGac -5'
19117 5' -65.3 NC_004684.1 + 57285 0.66 0.296831
Target:  5'- gGUCCaCGCGCUUgucGCCGGuguggcugagcACCCGGCg-- -3'
miRNA:   3'- -UAGG-GCGUGGA---CGGCC-----------UGGGCCGgac -5'
19117 5' -65.3 NC_004684.1 + 9275 0.66 0.289985
Target:  5'- gGUCgCGUugUU-CgCGGACCCGGCCa- -3'
miRNA:   3'- -UAGgGCGugGAcG-GCCUGGGCCGGac -5'
19117 5' -65.3 NC_004684.1 + 6907 0.66 0.289985
Target:  5'- cGUCCUGCACCcgguguUGCCcgaGGaacuGCCCGGCaugCUGg -3'
miRNA:   3'- -UAGGGCGUGG------ACGG---CC----UGGGCCG---GAC- -5'
19117 5' -65.3 NC_004684.1 + 11151 0.66 0.289985
Target:  5'- --gUCGCGCCgucGgUGGACCUGGCCg- -3'
miRNA:   3'- uagGGCGUGGa--CgGCCUGGGCCGGac -5'
19117 5' -65.3 NC_004684.1 + 4591 0.66 0.283264
Target:  5'- cUCCCcCGCCUGcCCGGcaACCCcGCCg- -3'
miRNA:   3'- uAGGGcGUGGAC-GGCC--UGGGcCGGac -5'
19117 5' -65.3 NC_004684.1 + 22466 0.66 0.283264
Target:  5'- -gCCCGCGCUccagGCCGGuucCCUGGCa-- -3'
miRNA:   3'- uaGGGCGUGGa---CGGCCu--GGGCCGgac -5'
19117 5' -65.3 NC_004684.1 + 24507 0.66 0.283264
Target:  5'- gGUCUCgGUGCCagagGCCGGGCgugcggCGGCCUGg -3'
miRNA:   3'- -UAGGG-CGUGGa---CGGCCUGg-----GCCGGAC- -5'
19117 5' -65.3 NC_004684.1 + 47823 0.66 0.283264
Target:  5'- ---gCGUGCCUGCucguCGGACCCG-CCUGa -3'
miRNA:   3'- uaggGCGUGGACG----GCCUGGGCcGGAC- -5'
19117 5' -65.3 NC_004684.1 + 61697 0.66 0.283264
Target:  5'- -gUCgGUGCCgugggcagGCCGGGCCCcGGCCa- -3'
miRNA:   3'- uaGGgCGUGGa-------CGGCCUGGG-CCGGac -5'
19117 5' -65.3 NC_004684.1 + 53394 0.66 0.276667
Target:  5'- --aCUGCACCguguccaggugGCCGGG-CUGGCCUGc -3'
miRNA:   3'- uagGGCGUGGa----------CGGCCUgGGCCGGAC- -5'
19117 5' -65.3 NC_004684.1 + 5241 0.66 0.263841
Target:  5'- -cCCUGCGCaagGCCGGGCaCGGCgaGg -3'
miRNA:   3'- uaGGGCGUGga-CGGCCUGgGCCGgaC- -5'
19117 5' -65.3 NC_004684.1 + 55548 0.66 0.263841
Target:  5'- -aCUCGCGCCgcuggccGCCGuGGCCCGGUg-- -3'
miRNA:   3'- uaGGGCGUGGa------CGGC-CUGGGCCGgac -5'
19117 5' -65.3 NC_004684.1 + 8575 0.67 0.255766
Target:  5'- cAUCCCggacauccgaggcgGCACCUaccGCCGGgacaACCUGGCCc- -3'
miRNA:   3'- -UAGGG--------------CGUGGA---CGGCC----UGGGCCGGac -5'
19117 5' -65.3 NC_004684.1 + 27871 0.67 0.253932
Target:  5'- aGUgCCGguCgCUGCuCGGcuacgacgacaguugGCCCGGCCUGc -3'
miRNA:   3'- -UAgGGCguG-GACG-GCC---------------UGGGCCGGAC- -5'
19117 5' -65.3 NC_004684.1 + 18447 0.67 0.251503
Target:  5'- -gCCCGCcgACgUGCCGuucggcgacgaGGCCgGGCCUGc -3'
miRNA:   3'- uaGGGCG--UGgACGGC-----------CUGGgCCGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.