miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 3' -64.1 NC_004684.1 + 62892 0.65 0.387246
Target:  5'- cGGCCauGCCGuuGccacggcGGGCCAggcCcUGGCCg -3'
miRNA:   3'- cCCGG--CGGCggC-------UCCGGUa--GcACCGG- -5'
19118 3' -64.1 NC_004684.1 + 50651 0.65 0.387246
Target:  5'- --aCCGCCGUCGGGGgugcggaCCAggCGUGcGCCc -3'
miRNA:   3'- cccGGCGGCGGCUCC-------GGUa-GCAC-CGG- -5'
19118 3' -64.1 NC_004684.1 + 15253 0.65 0.38559
Target:  5'- -cGCCGCUGCCacgcaagacacugGAGGCCugcgCGgugcaccugcugGGCCu -3'
miRNA:   3'- ccCGGCGGCGG-------------CUCCGGua--GCa-----------CCGG- -5'
19118 3' -64.1 NC_004684.1 + 9771 0.65 0.38559
Target:  5'- aGGCCuGCguggaagaccucuaCGCCGAGGCCcugcgccgGUGGCa -3'
miRNA:   3'- cCCGG-CG--------------GCGGCUCCGGuag-----CACCGg -5'
19118 3' -64.1 NC_004684.1 + 55948 0.66 0.383116
Target:  5'- aGGCCGaCGCCGAcgccgcgcuccagcgGGUCAUCGgcgucuacGGCg -3'
miRNA:   3'- cCCGGCgGCGGCU---------------CCGGUAGCa-------CCGg -5'
19118 3' -64.1 NC_004684.1 + 18104 0.66 0.379833
Target:  5'- aGGCCaCCGagcgCGAGGCCggUGUGGaCa -3'
miRNA:   3'- cCCGGcGGCg---GCUCCGGuaGCACCgG- -5'
19118 3' -64.1 NC_004684.1 + 27949 0.66 0.379833
Target:  5'- -aGCCGCaCGCCucGGCCugg--GGCCa -3'
miRNA:   3'- ccCGGCG-GCGGcuCCGGuagcaCCGG- -5'
19118 3' -64.1 NC_004684.1 + 63172 0.66 0.379833
Target:  5'- aGGuuGCgCGCCG-GGUCGacUCGacgcGGCCg -3'
miRNA:   3'- cCCggCG-GCGGCuCCGGU--AGCa---CCGG- -5'
19118 3' -64.1 NC_004684.1 + 40461 0.66 0.379833
Target:  5'- cGGCCGCCuGCUcgGGGGUC-UCGgcGGUCu -3'
miRNA:   3'- cCCGGCGG-CGG--CUCCGGuAGCa-CCGG- -5'
19118 3' -64.1 NC_004684.1 + 39329 0.66 0.379833
Target:  5'- -uGCCG-CGCCcAGGCCGgu-UGGCCg -3'
miRNA:   3'- ccCGGCgGCGGcUCCGGUagcACCGG- -5'
19118 3' -64.1 NC_004684.1 + 45172 0.66 0.379833
Target:  5'- gGGuGCCGUCGCgcaggGAGGCCA-CcUGcGCCa -3'
miRNA:   3'- -CC-CGGCGGCGg----CUCCGGUaGcAC-CGG- -5'
19118 3' -64.1 NC_004684.1 + 65857 0.66 0.377384
Target:  5'- gGGGCCGCUgguGCCaccucggagggguuGAcGCCGUaGUGGUCg -3'
miRNA:   3'- -CCCGGCGG---CGG--------------CUcCGGUAgCACCGG- -5'
19118 3' -64.1 NC_004684.1 + 56590 0.66 0.374945
Target:  5'- -aGCCGCCggaugccgcuacgguGCCGAcGCCGUCGcgGGUg -3'
miRNA:   3'- ccCGGCGG---------------CGGCUcCGGUAGCa-CCGg -5'
19118 3' -64.1 NC_004684.1 + 62894 0.66 0.374945
Target:  5'- uGGCCGCCaGCuCGGcgggguuacgguagcGGCCAaCGacGGCCu -3'
miRNA:   3'- cCCGGCGG-CG-GCU---------------CCGGUaGCa-CCGG- -5'
19118 3' -64.1 NC_004684.1 + 12833 0.66 0.371709
Target:  5'- cGGCUcuGCUGCCGAcGUgGUCGcggaGGCCg -3'
miRNA:   3'- cCCGG--CGGCGGCUcCGgUAGCa---CCGG- -5'
19118 3' -64.1 NC_004684.1 + 33097 0.66 0.371709
Target:  5'- uGGcGCUGCCGaCGcAGGCgCucgCGcUGGCCa -3'
miRNA:   3'- -CC-CGGCGGCgGC-UCCG-Gua-GC-ACCGG- -5'
19118 3' -64.1 NC_004684.1 + 35647 0.66 0.371709
Target:  5'- aGGCCGaCGUacaGGGCCGUCGgcGGCg -3'
miRNA:   3'- cCCGGCgGCGgc-UCCGGUAGCa-CCGg -5'
19118 3' -64.1 NC_004684.1 + 13102 0.66 0.371709
Target:  5'- cGGuGCaCGCCGCCccaccGGCCAgCGcGGCa -3'
miRNA:   3'- -CC-CG-GCGGCGGcu---CCGGUaGCaCCGg -5'
19118 3' -64.1 NC_004684.1 + 9415 0.66 0.371709
Target:  5'- aGGCCagccuggacaGCCGCgaGAcGGCCAUgGUggaGGCCc -3'
miRNA:   3'- cCCGG----------CGGCGg-CU-CCGGUAgCA---CCGG- -5'
19118 3' -64.1 NC_004684.1 + 60064 0.66 0.371709
Target:  5'- uGGCgCGCgGcCCGGcGGCCcgUGcgGGCCu -3'
miRNA:   3'- cCCG-GCGgC-GGCU-CCGGuaGCa-CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.