miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 3888 0.66 0.753865
Target:  5'- cCAGGcCGCCcuGCUGGCgCAGGcGCa- -3'
miRNA:   3'- cGUCC-GUGGuuCGACCG-GUUCuUGgu -5'
19118 5' -55.3 NC_004684.1 + 17362 0.66 0.753865
Target:  5'- cCAGGCACCGGccacGCUGccGCCGAcGGugCGc -3'
miRNA:   3'- cGUCCGUGGUU----CGAC--CGGUU-CUugGU- -5'
19118 5' -55.3 NC_004684.1 + 42426 0.66 0.753865
Target:  5'- -uGGGaCACCGgaAGCgUGGCCGGGucggcACCGa -3'
miRNA:   3'- cgUCC-GUGGU--UCG-ACCGGUUCu----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 27511 0.66 0.753865
Target:  5'- gGCGGGC-CagAGGCUGG-CAAGGACg- -3'
miRNA:   3'- -CGUCCGuGg-UUCGACCgGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 23846 0.66 0.753865
Target:  5'- -aAGGCcaagGCCGAGUgggaGGCCcagugggagGAGGACCAc -3'
miRNA:   3'- cgUCCG----UGGUUCGa---CCGG---------UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63894 0.66 0.753865
Target:  5'- aGC-GGUGCCAGG-UGGuCCAGGuACCGg -3'
miRNA:   3'- -CGuCCGUGGUUCgACC-GGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 3414 0.66 0.753865
Target:  5'- gGCAcccuGGCACC--GCUGGCCGccacagucagcGGcACCAc -3'
miRNA:   3'- -CGU----CCGUGGuuCGACCGGU-----------UCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53756 0.66 0.753865
Target:  5'- cGCAGGUGCgCGgcGGCgaacGuGCgCAGGAACCAc -3'
miRNA:   3'- -CGUCCGUG-GU--UCGa---C-CG-GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 37606 0.66 0.75283
Target:  5'- uGCGGGCccggccgcccauGCCGAacgccgucggugcGCUGGCCAu-GGCCGc -3'
miRNA:   3'- -CGUCCG------------UGGUU-------------CGACCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 41883 0.66 0.751794
Target:  5'- cGCAGGC-CCGcgacaugaacgcGCUGGCCGAccGGACg- -3'
miRNA:   3'- -CGUCCGuGGUu-----------CGACCGGUU--CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 18182 0.66 0.743462
Target:  5'- --cGGCACCGAccGaCUGGCCGAccGAGCa- -3'
miRNA:   3'- cguCCGUGGUU--C-GACCGGUU--CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 54489 0.66 0.743462
Target:  5'- cGCAccGGCACC--GCUGGCgGcGAGCgCAg -3'
miRNA:   3'- -CGU--CCGUGGuuCGACCGgUuCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 4862 0.66 0.743462
Target:  5'- uGCuGGCcagcgACCAGGCUGaCUggGAcACCAa -3'
miRNA:   3'- -CGuCCG-----UGGUUCGACcGGuuCU-UGGU- -5'
19118 5' -55.3 NC_004684.1 + 56884 0.66 0.743462
Target:  5'- gGCcccGCACCuuggcGAGgaGGCCAAGGccGCCAu -3'
miRNA:   3'- -CGuc-CGUGG-----UUCgaCCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 53823 0.66 0.742415
Target:  5'- uGCGGGCGugcgcuuCCAGGCUGGagu-GcAACCAg -3'
miRNA:   3'- -CGUCCGU-------GGUUCGACCgguuC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 48778 0.66 0.732946
Target:  5'- uGCcGaCGCCGGGCgGGCCGAuGAugCAg -3'
miRNA:   3'- -CGuCcGUGGUUCGaCCGGUU-CUugGU- -5'
19118 5' -55.3 NC_004684.1 + 8768 0.66 0.732946
Target:  5'- aGCGcGGCACC-AGCc-GCCAcGGGCCGu -3'
miRNA:   3'- -CGU-CCGUGGuUCGacCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 67081 0.66 0.732946
Target:  5'- uGCGGGCguugGCCucGGC-GGCCAGcGAACUc -3'
miRNA:   3'- -CGUCCG----UGGu-UCGaCCGGUU-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 26135 0.66 0.732946
Target:  5'- cGCAccaGCACCucGCUGGCCGcgcagaucgAGGACa- -3'
miRNA:   3'- -CGUc--CGUGGuuCGACCGGU---------UCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 56429 0.66 0.732946
Target:  5'- uCGGGguCCAAGgaGGCCGcc-ACCAc -3'
miRNA:   3'- cGUCCguGGUUCgaCCGGUucuUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.