miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 19990 0.66 0.722328
Target:  5'- aGCAGGCACCGG--UGGUCcuGuGACCGc -3'
miRNA:   3'- -CGUCCGUGGUUcgACCGGuuC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53756 0.66 0.753865
Target:  5'- cGCAGGUGCgCGgcGGCgaacGuGCgCAGGAACCAc -3'
miRNA:   3'- -CGUCCGUG-GU--UCGa---C-CG-GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 41883 0.66 0.751794
Target:  5'- cGCAGGC-CCGcgacaugaacgcGCUGGCCGAccGGACg- -3'
miRNA:   3'- -CGUCCGuGGUu-----------CGACCGGUU--CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 37606 0.66 0.75283
Target:  5'- uGCGGGCccggccgcccauGCCGAacgccgucggugcGCUGGCCAu-GGCCGc -3'
miRNA:   3'- -CGUCCG------------UGGUU-------------CGACCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53823 0.66 0.742415
Target:  5'- uGCGGGCGugcgcuuCCAGGCUGGagu-GcAACCAg -3'
miRNA:   3'- -CGUCCGU-------GGUUCGACCgguuC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 48778 0.66 0.732946
Target:  5'- uGCcGaCGCCGGGCgGGCCGAuGAugCAg -3'
miRNA:   3'- -CGuCcGUGGUUCGaCCGGUU-CUugGU- -5'
19118 5' -55.3 NC_004684.1 + 56884 0.66 0.743462
Target:  5'- gGCcccGCACCuuggcGAGgaGGCCAAGGccGCCAu -3'
miRNA:   3'- -CGuc-CGUGG-----UUCgaCCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 23646 0.66 0.711621
Target:  5'- uGCuGGCACCGcuGCUGaCCGGGuacACCGa -3'
miRNA:   3'- -CGuCCGUGGUu-CGACcGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 27105 0.66 0.700835
Target:  5'- --cGGUACCGAcuuugcGCUGGCCGuu-GCCGg -3'
miRNA:   3'- cguCCGUGGUU------CGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 40689 0.66 0.732946
Target:  5'- aGguGGCgacgaacuucaGCUggGCggcggUGGCCGGGAcgACCAg -3'
miRNA:   3'- -CguCCG-----------UGGuuCG-----ACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 5826 0.66 0.700835
Target:  5'- cGUGGaGUA-CAAGCUGGCgguguuCGAGGACCAg -3'
miRNA:   3'- -CGUC-CGUgGUUCGACCG------GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65573 0.66 0.722328
Target:  5'- cGCAGGUcaGCCGccauGGCcucGGUCAuGAGCCGc -3'
miRNA:   3'- -CGUCCG--UGGU----UCGa--CCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 18505 0.66 0.700835
Target:  5'- cGCuGGGCAguUCAAGCUGGCggucaacggCAAGGucACCGa -3'
miRNA:   3'- -CG-UCCGU--GGUUCGACCG---------GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 56429 0.66 0.732946
Target:  5'- uCGGGguCCAAGgaGGCCGcc-ACCAc -3'
miRNA:   3'- cGUCCguGGUUCgaCCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 27511 0.66 0.753865
Target:  5'- gGCGGGC-CagAGGCUGG-CAAGGACg- -3'
miRNA:   3'- -CGUCCGuGg-UUCGACCgGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 28353 0.66 0.711621
Target:  5'- aGCAGGCcaccgucuACCGgguguccugggAGCUGGCCAuccucucGCCGu -3'
miRNA:   3'- -CGUCCG--------UGGU-----------UCGACCGGUucu----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 63894 0.66 0.753865
Target:  5'- aGC-GGUGCCAGG-UGGuCCAGGuACCGg -3'
miRNA:   3'- -CGuCCGUGGUUCgACC-GGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 67081 0.66 0.732946
Target:  5'- uGCGGGCguugGCCucGGC-GGCCAGcGAACUc -3'
miRNA:   3'- -CGUCCG----UGGu-UCGaCCGGUU-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 26135 0.66 0.732946
Target:  5'- cGCAccaGCACCucGCUGGCCGcgcagaucgAGGACa- -3'
miRNA:   3'- -CGUc--CGUGGuuCGACCGGU---------UCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 11520 0.66 0.732946
Target:  5'- --cGGCACCGcucGGUgGGCCu-GGGCCAc -3'
miRNA:   3'- cguCCGUGGU---UCGaCCGGuuCUUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.