miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 557 0.66 0.711621
Target:  5'- -aGGGCACCGGGUUuGaCGAGGACUAc -3'
miRNA:   3'- cgUCCGUGGUUCGAcCgGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 30624 0.66 0.732946
Target:  5'- aGCGucGGCACCGGGCgcGGCCcuGGcggcgucagcGCCGg -3'
miRNA:   3'- -CGU--CCGUGGUUCGa-CCGGuuCU----------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 40083 0.66 0.700835
Target:  5'- aGCuGGCcgcACCGAGCaGGCCAccGAACa- -3'
miRNA:   3'- -CGuCCG---UGGUUCGaCCGGUu-CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 63894 0.66 0.753865
Target:  5'- aGC-GGUGCCAGG-UGGuCCAGGuACCGg -3'
miRNA:   3'- -CGuCCGUGGUUCgACC-GGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 5826 0.66 0.700835
Target:  5'- cGUGGaGUA-CAAGCUGGCgguguuCGAGGACCAg -3'
miRNA:   3'- -CGUC-CGUgGUUCGACCG------GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 27105 0.66 0.700835
Target:  5'- --cGGUACCGAcuuugcGCUGGCCGuu-GCCGg -3'
miRNA:   3'- cguCCGUGGUU------CGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 8768 0.66 0.732946
Target:  5'- aGCGcGGCACC-AGCc-GCCAcGGGCCGu -3'
miRNA:   3'- -CGU-CCGUGGuUCGacCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 9896 0.66 0.726587
Target:  5'- cGCAGGCACCugcguGCggcgcuugucgacggUGGgCAGGA-CCGg -3'
miRNA:   3'- -CGUCCGUGGuu---CG---------------ACCgGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 53756 0.66 0.753865
Target:  5'- cGCAGGUGCgCGgcGGCgaacGuGCgCAGGAACCAc -3'
miRNA:   3'- -CGUCCGUG-GU--UCGa---C-CG-GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 11520 0.66 0.732946
Target:  5'- --cGGCACCGcucGGUgGGCCu-GGGCCAc -3'
miRNA:   3'- cguCCGUGGU---UCGaCCGGuuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 67081 0.66 0.732946
Target:  5'- uGCGGGCguugGCCucGGC-GGCCAGcGAACUc -3'
miRNA:   3'- -CGUCCG----UGGu-UCGaCCGGUU-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 23646 0.66 0.711621
Target:  5'- uGCuGGCACCGcuGCUGaCCGGGuacACCGa -3'
miRNA:   3'- -CGuCCGUGGUu-CGACcGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 65573 0.66 0.722328
Target:  5'- cGCAGGUcaGCCGccauGGCcucGGUCAuGAGCCGc -3'
miRNA:   3'- -CGUCCG--UGGU----UCGa--CCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 18182 0.66 0.743462
Target:  5'- --cGGCACCGAccGaCUGGCCGAccGAGCa- -3'
miRNA:   3'- cguCCGUGGUU--C-GACCGGUU--CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 18505 0.66 0.700835
Target:  5'- cGCuGGGCAguUCAAGCUGGCggucaacggCAAGGucACCGa -3'
miRNA:   3'- -CG-UCCGU--GGUUCGACCG---------GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 56429 0.66 0.732946
Target:  5'- uCGGGguCCAAGgaGGCCGcc-ACCAc -3'
miRNA:   3'- cGUCCguGGUUCgaCCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 26135 0.66 0.732946
Target:  5'- cGCAccaGCACCucGCUGGCCGcgcagaucgAGGACa- -3'
miRNA:   3'- -CGUc--CGUGGuuCGACCGGU---------UCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 17021 0.66 0.711621
Target:  5'- ---cGCACCGAGCgGGUgAAGAacGCCGc -3'
miRNA:   3'- cgucCGUGGUUCGaCCGgUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 62982 0.67 0.646122
Target:  5'- uGguGcGCACguGGCcggUGGCCGGGAACgCGa -3'
miRNA:   3'- -CguC-CGUGguUCG---ACCGGUUCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 5779 0.67 0.646122
Target:  5'- cGCAGcgcgcuacuGCGCCAGGCgugcgaGGUCGGGAcguGCCGc -3'
miRNA:   3'- -CGUC---------CGUGGUUCGa-----CCGGUUCU---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.