Results 41 - 60 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 28843 | 0.67 | 0.657132 |
Target: 5'- uGC-GGCGaacuGGCUGGCCGucacGAACCGg -3' miRNA: 3'- -CGuCCGUggu-UCGACCGGUu---CUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 45169 | 0.67 | 0.656032 |
Target: 5'- cGCGGGUGCCGucgcgcaGGgaGGCCAccuGcGCCAg -3' miRNA: 3'- -CGUCCGUGGU-------UCgaCCGGUu--CuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 57203 | 0.67 | 0.646122 |
Target: 5'- cGCuGGCGCUggGC-GGUCuGGAACUc -3' miRNA: 3'- -CGuCCGUGGuuCGaCCGGuUCUUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 20969 | 0.67 | 0.635098 |
Target: 5'- cCAGauGCGCCGGgacauGCUGGCCGuGGACCc -3' miRNA: 3'- cGUC--CGUGGUU-----CGACCGGUuCUUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 33419 | 0.67 | 0.635098 |
Target: 5'- aGUAGGCGgUAGGUccgacGGCCAuGGGGCCGa -3' miRNA: 3'- -CGUCCGUgGUUCGa----CCGGU-UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 8983 | 0.67 | 0.646122 |
Target: 5'- gGCGGGguUCcGGCggccgGGCCAAGGccuCCAc -3' miRNA: 3'- -CGUCCguGGuUCGa----CCGGUUCUu--GGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 22934 | 0.67 | 0.635098 |
Target: 5'- cGCAGGUgGCCAgcgugcucAGCUGGUCGAcuacgccaccGGGCCGg -3' miRNA: 3'- -CGUCCG-UGGU--------UCGACCGGUU----------CUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 36265 | 0.67 | 0.635098 |
Target: 5'- -gAGGUGuCCGgcGGcCUGGCCAAGAACgAg -3' miRNA: 3'- cgUCCGU-GGU--UC-GACCGGUUCUUGgU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 9464 | 0.67 | 0.635098 |
Target: 5'- cCGGGCGCUgGAGCUGGCgggCAAGcgcAGCCGu -3' miRNA: 3'- cGUCCGUGG-UUCGACCG---GUUC---UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 41950 | 0.67 | 0.689982 |
Target: 5'- gGC-GGCACCAAc--GGCCugGAGGACCGc -3' miRNA: 3'- -CGuCCGUGGUUcgaCCGG--UUCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 55556 | 0.67 | 0.689982 |
Target: 5'- cGCuGGcCGCCGuGGCccggUGGCCGGGGGuCCAg -3' miRNA: 3'- -CGuCC-GUGGU-UCG----ACCGGUUCUU-GGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 11911 | 0.67 | 0.69433 |
Target: 5'- uGCGcGGCACCAccgAcagccagggccguccGCUGGCCAuGGucGCCAg -3' miRNA: 3'- -CGU-CCGUGGU---U---------------CGACCGGUuCU--UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 21219 | 0.67 | 0.679073 |
Target: 5'- cGCAGGCGCUucacuucugguGGCgUGGCCGcGAgguguucgugcGCCAg -3' miRNA: 3'- -CGUCCGUGGu----------UCG-ACCGGUuCU-----------UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 20874 | 0.67 | 0.635098 |
Target: 5'- uGCAGGCAaguCCAccgucaucggcaAGCUGGCCu----CCAa -3' miRNA: 3'- -CGUCCGU---GGU------------UCGACCGGuucuuGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 57890 | 0.67 | 0.679073 |
Target: 5'- uGCuGGCuggugGCCGGGCugaaggUGGCCGGGcuGACCGc -3' miRNA: 3'- -CGuCCG-----UGGUUCG------ACCGGUUC--UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 13384 | 0.67 | 0.66812 |
Target: 5'- uGguGGUGuCC--GCUGGCCGAuuGAGCCGg -3' miRNA: 3'- -CguCCGU-GGuuCGACCGGUU--CUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 45227 | 0.67 | 0.657132 |
Target: 5'- uGC-GGCGCUugguGCUGGUCAGGcccggcAGCCAg -3' miRNA: 3'- -CGuCCGUGGuu--CGACCGGUUC------UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 43133 | 0.67 | 0.657132 |
Target: 5'- cGCGacuuGC-CCAGGCgGGCCAGGAugUAc -3' miRNA: 3'- -CGUc---CGuGGUUCGaCCGGUUCUugGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 35524 | 0.67 | 0.646122 |
Target: 5'- cGCuacuGCACCGAGUgcgGGCacgAGGAGCCGc -3' miRNA: 3'- -CGuc--CGUGGUUCGa--CCGg--UUCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 55447 | 0.67 | 0.688893 |
Target: 5'- cGguGGUcuaugucGCCAAGCgcggugaaggccUGGCCGAGGAUgAa -3' miRNA: 3'- -CguCCG-------UGGUUCG------------ACCGGUUCUUGgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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