miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 55556 0.67 0.689982
Target:  5'- cGCuGGcCGCCGuGGCccggUGGCCGGGGGuCCAg -3'
miRNA:   3'- -CGuCC-GUGGU-UCG----ACCGGUUCUU-GGU- -5'
19118 5' -55.3 NC_004684.1 + 41950 0.67 0.689982
Target:  5'- gGC-GGCACCAAc--GGCCugGAGGACCGc -3'
miRNA:   3'- -CGuCCGUGGUUcgaCCGG--UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55447 0.67 0.688893
Target:  5'- cGguGGUcuaugucGCCAAGCgcggugaaggccUGGCCGAGGAUgAa -3'
miRNA:   3'- -CguCCG-------UGGUUCG------------ACCGGUUCUUGgU- -5'
19118 5' -55.3 NC_004684.1 + 57890 0.67 0.679073
Target:  5'- uGCuGGCuggugGCCGGGCugaaggUGGCCGGGcuGACCGc -3'
miRNA:   3'- -CGuCCG-----UGGUUCG------ACCGGUUC--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 21219 0.67 0.679073
Target:  5'- cGCAGGCGCUucacuucugguGGCgUGGCCGcGAgguguucgugcGCCAg -3'
miRNA:   3'- -CGUCCGUGGu----------UCG-ACCGGUuCU-----------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 17658 0.67 0.679073
Target:  5'- aGCAGGagacaaGCC-AGCaUGGCCGAGuuCCc -3'
miRNA:   3'- -CGUCCg-----UGGuUCG-ACCGGUUCuuGGu -5'
19118 5' -55.3 NC_004684.1 + 5604 0.67 0.657132
Target:  5'- --cGGgGCCGAGCUGGCgCGcauggugcuGGAGCUg -3'
miRNA:   3'- cguCCgUGGUUCGACCG-GU---------UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 32826 0.67 0.683443
Target:  5'- aGCA-GCACCGccagcgcgcucucguAGCUGGCCAu-GGCCu -3'
miRNA:   3'- -CGUcCGUGGU---------------UCGACCGGUucUUGGu -5'
19118 5' -55.3 NC_004684.1 + 34936 0.67 0.66812
Target:  5'- cGCAGGUugcccGCCGAGUUcGaGUCGAGGugCAu -3'
miRNA:   3'- -CGUCCG-----UGGUUCGA-C-CGGUUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 44501 0.67 0.683443
Target:  5'- cGCuGGCACCGAcGCgcagcagcucccgaaUGGUCGAGuuCCAg -3'
miRNA:   3'- -CGuCCGUGGUU-CG---------------ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 22869 0.67 0.646122
Target:  5'- cCGGGcCACCAcGGC-GGCCAAGAcGCUg -3'
miRNA:   3'- cGUCC-GUGGU-UCGaCCGGUUCU-UGGu -5'
19118 5' -55.3 NC_004684.1 + 8983 0.67 0.646122
Target:  5'- gGCGGGguUCcGGCggccgGGCCAAGGccuCCAc -3'
miRNA:   3'- -CGUCCguGGuUCGa----CCGGUUCUu--GGU- -5'
19118 5' -55.3 NC_004684.1 + 3142 0.67 0.646122
Target:  5'- uGguGuGCGCCAacacccAGCgccUGGCCGAG-GCCAa -3'
miRNA:   3'- -CguC-CGUGGU------UCG---ACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 33419 0.67 0.635098
Target:  5'- aGUAGGCGgUAGGUccgacGGCCAuGGGGCCGa -3'
miRNA:   3'- -CGUCCGUgGUUCGa----CCGGU-UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 22934 0.67 0.635098
Target:  5'- cGCAGGUgGCCAgcgugcucAGCUGGUCGAcuacgccaccGGGCCGg -3'
miRNA:   3'- -CGUCCG-UGGU--------UCGACCGGUU----------CUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 20874 0.67 0.635098
Target:  5'- uGCAGGCAaguCCAccgucaucggcaAGCUGGCCu----CCAa -3'
miRNA:   3'- -CGUCCGU---GGU------------UCGACCGGuucuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 49123 0.67 0.679073
Target:  5'- aGCAGGCgGCCGGGC-GuGCCGuu-GCCGu -3'
miRNA:   3'- -CGUCCG-UGGUUCGaC-CGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 15317 0.67 0.679073
Target:  5'- cGguGGCAUgGAGCgGGCguuCAAGGccGCCGg -3'
miRNA:   3'- -CguCCGUGgUUCGaCCG---GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 36258 0.67 0.679073
Target:  5'- aGCAGGUugugcGCCAGGUc-GCCAAGGuccuCCAg -3'
miRNA:   3'- -CGUCCG-----UGGUUCGacCGGUUCUu---GGU- -5'
19118 5' -55.3 NC_004684.1 + 57203 0.67 0.646122
Target:  5'- cGCuGGCGCUggGC-GGUCuGGAACUc -3'
miRNA:   3'- -CGuCCGUGGuuCGaCCGGuUCUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.