miRNA display CGI


Results 81 - 100 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 3142 0.67 0.646122
Target:  5'- uGguGuGCGCCAacacccAGCgccUGGCCGAG-GCCAa -3'
miRNA:   3'- -CguC-CGUGGU------UCG---ACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 62968 0.67 0.66812
Target:  5'- aGCAGGC-CCGcgcguuguuccGGC-GGCCAGGAcuuGCUg -3'
miRNA:   3'- -CGUCCGuGGU-----------UCGaCCGGUUCU---UGGu -5'
19118 5' -55.3 NC_004684.1 + 36258 0.67 0.679073
Target:  5'- aGCAGGUugugcGCCAGGUc-GCCAAGGuccuCCAg -3'
miRNA:   3'- -CGUCCG-----UGGUUCGacCGGUUCUu---GGU- -5'
19118 5' -55.3 NC_004684.1 + 44501 0.67 0.683443
Target:  5'- cGCuGGCACCGAcGCgcagcagcucccgaaUGGUCGAGuuCCAg -3'
miRNA:   3'- -CGuCCGUGGUU-CG---------------ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 59339 0.67 0.689982
Target:  5'- aGCc-GCACCcuGCUGGCgCugGAGGACCGc -3'
miRNA:   3'- -CGucCGUGGuuCGACCG-G--UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 32826 0.67 0.683443
Target:  5'- aGCA-GCACCGccagcgcgcucucguAGCUGGCCAu-GGCCu -3'
miRNA:   3'- -CGUcCGUGGU---------------UCGACCGGUucUUGGu -5'
19118 5' -55.3 NC_004684.1 + 49123 0.67 0.679073
Target:  5'- aGCAGGCgGCCGGGC-GuGCCGuu-GCCGu -3'
miRNA:   3'- -CGUCCG-UGGUUCGaC-CGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 15317 0.67 0.679073
Target:  5'- cGguGGCAUgGAGCgGGCguuCAAGGccGCCGg -3'
miRNA:   3'- -CguCCGUGgUUCGaCCG---GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 9253 0.68 0.624072
Target:  5'- cGCuGGCGgugcucauccCCGAGCUGGCCGAugucgaguucccGAcGCCGa -3'
miRNA:   3'- -CGuCCGU----------GGUUCGACCGGUU------------CU-UGGU- -5'
19118 5' -55.3 NC_004684.1 + 63749 0.68 0.624072
Target:  5'- --cGGCACCGGGC-GGCCAcuAGuuugcGGCCGa -3'
miRNA:   3'- cguCCGUGGUUCGaCCGGU--UC-----UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55363 0.68 0.624072
Target:  5'- uGCAGuacaGCAgugaCAAGCUGGCCcGGAucgcGCCGg -3'
miRNA:   3'- -CGUC----CGUg---GUUCGACCGGuUCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 53669 0.68 0.624072
Target:  5'- cGCAGGCGCaCAcgGGUgGGCC-GGAACa- -3'
miRNA:   3'- -CGUCCGUG-GU--UCGaCCGGuUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 67025 0.68 0.613053
Target:  5'- --cGGCACCAcgauGGcCUGGCCAccGAGCUg -3'
miRNA:   3'- cguCCGUGGU----UC-GACCGGUu-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 52512 0.68 0.613053
Target:  5'- uGCAuguGGCAguUCAAGCcGGUguGGAGCCAg -3'
miRNA:   3'- -CGU---CCGU--GGUUCGaCCGguUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 49039 0.68 0.613053
Target:  5'- cGCAGGCuccuccuccucGgCAGGCUcGGCCAGGuGCUc -3'
miRNA:   3'- -CGUCCG-----------UgGUUCGA-CCGGUUCuUGGu -5'
19118 5' -55.3 NC_004684.1 + 55856 0.68 0.60205
Target:  5'- uGCAGuGCgacgucgacGCCAAGgUGGCCGGGGcauggACCu -3'
miRNA:   3'- -CGUC-CG---------UGGUUCgACCGGUUCU-----UGGu -5'
19118 5' -55.3 NC_004684.1 + 47164 0.68 0.591074
Target:  5'- -aGGaGCACCGuAGCggcGGCCAGGGccGCCGc -3'
miRNA:   3'- cgUC-CGUGGU-UCGa--CCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 47377 0.68 0.580132
Target:  5'- uCAGGCACCAcggccuccGGUgcGGUCAcAGGACCAc -3'
miRNA:   3'- cGUCCGUGGU--------UCGa-CCGGU-UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 1650 0.68 0.580132
Target:  5'- --cGGCGCcCAAGUggGGCCAgcucgacucccuGGAACCGa -3'
miRNA:   3'- cguCCGUG-GUUCGa-CCGGU------------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 64729 0.68 0.580132
Target:  5'- uCGGGUccaucuugugGCCGAccuGCUGGCCGAGcugguGCCAg -3'
miRNA:   3'- cGUCCG----------UGGUU---CGACCGGUUCu----UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.