Results 21 - 40 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 54630 | 0.73 | 0.344707 |
Target: 5'- cGCAGGCgcaGCCGcGCgGGCCAAGAgggcgucgACCu -3' miRNA: 3'- -CGUCCG---UGGUuCGaCCGGUUCU--------UGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 63362 | 0.73 | 0.320449 |
Target: 5'- cCAGcGCACCGAGC-GGCCGAcGcGCCAg -3' miRNA: 3'- cGUC-CGUGGUUCGaCCGGUU-CuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 53729 | 0.73 | 0.328391 |
Target: 5'- gGCAuGGUGCCGGGUUcgacGGCCAGGAacACCGa -3' miRNA: 3'- -CGU-CCGUGGUUCGA----CCGGUUCU--UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 48979 | 0.73 | 0.344707 |
Target: 5'- gGCGGGCgcgucgguGCCcuGCUGGCCGGGcccGACCc -3' miRNA: 3'- -CGUCCG--------UGGuuCGACCGGUUC---UUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 41044 | 0.73 | 0.352237 |
Target: 5'- cGCAcGGCACUAcaccgacgaaggcAGCUGGaCCGAGGACa- -3' miRNA: 3'- -CGU-CCGUGGU-------------UCGACC-GGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 36223 | 0.73 | 0.353081 |
Target: 5'- aGCGuGGcCACCGccgagaccgcuGGCgUGGCCAAGAGCUAu -3' miRNA: 3'- -CGU-CC-GUGGU-----------UCG-ACCGGUUCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 10388 | 0.73 | 0.353081 |
Target: 5'- cCGGGUACCAGGCc-GCCAgcgugcAGAACCAc -3' miRNA: 3'- cGUCCGUGGUUCGacCGGU------UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 13582 | 0.73 | 0.353081 |
Target: 5'- gGCGGGCauucuccaggACCAgGGCUGGCC-GGAACUc -3' miRNA: 3'- -CGUCCG----------UGGU-UCGACCGGuUCUUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 3843 | 0.73 | 0.312652 |
Target: 5'- gGCAGcgGCCGAGgaGGCCGAGcGCCAc -3' miRNA: 3'- -CGUCcgUGGUUCgaCCGGUUCuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 53185 | 0.73 | 0.328391 |
Target: 5'- aCAGGCcgACCGcgccGCUGGCCAGGAAUg- -3' miRNA: 3'- cGUCCG--UGGUu---CGACCGGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 58100 | 0.72 | 0.397069 |
Target: 5'- -gAGcGCGCCGAGCaUGGCCGGGu-CCGc -3' miRNA: 3'- cgUC-CGUGGUUCG-ACCGGUUCuuGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 50613 | 0.72 | 0.397069 |
Target: 5'- gGCGGGuCAUC-GGCgUGGCCGacacAGAACCAg -3' miRNA: 3'- -CGUCC-GUGGuUCG-ACCGGU----UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 15773 | 0.72 | 0.397069 |
Target: 5'- -aGGuGCGCCGAGCgcGGCCAAGGaacACCu -3' miRNA: 3'- cgUC-CGUGGUUCGa-CCGGUUCU---UGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 15579 | 0.72 | 0.387993 |
Target: 5'- cGCAGcGCGCgCGGcCUGGCCGuGGACCGg -3' miRNA: 3'- -CGUC-CGUG-GUUcGACCGGUuCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 60499 | 0.72 | 0.379055 |
Target: 5'- cGCAGGCgcACCAGGUUGacgaccucGCCccAGAGCCAg -3' miRNA: 3'- -CGUCCG--UGGUUCGAC--------CGGu-UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 39272 | 0.72 | 0.370256 |
Target: 5'- uGCAGGcCACC-AGCaaGGCCucGAACCGc -3' miRNA: 3'- -CGUCC-GUGGuUCGa-CCGGuuCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 10262 | 0.72 | 0.361597 |
Target: 5'- aGCGGGCcaACCAA-CUGGCCAGcGAcGCCGg -3' miRNA: 3'- -CGUCCG--UGGUUcGACCGGUU-CU-UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 23056 | 0.72 | 0.379055 |
Target: 5'- --cGGCcugGCCAAGCUGGCCA---ACCGg -3' miRNA: 3'- cguCCG---UGGUUCGACCGGUucuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 12979 | 0.72 | 0.361597 |
Target: 5'- gGCAGGCaacACCGAGCgccgGGCCGGGugGAUUAu -3' miRNA: 3'- -CGUCCG---UGGUUCGa---CCGGUUC--UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 47335 | 0.71 | 0.444428 |
Target: 5'- uGUGGGCGUCGAGCaUGGCCAccaggccacgguAGGACCc -3' miRNA: 3'- -CGUCCGUGGUUCG-ACCGGU------------UCUUGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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