miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 46961 0.7 0.484504
Target:  5'- uGCAcaGCGCCAGGCUGaugcGCCAGGAGucguCCAg -3'
miRNA:   3'- -CGUc-CGUGGUUCGAC----CGGUUCUU----GGU- -5'
19118 5' -55.3 NC_004684.1 + 19582 0.7 0.505181
Target:  5'- aGCAGGCACgCcAGUUGuucgccGCCGAGAACa- -3'
miRNA:   3'- -CGUCCGUG-GuUCGAC------CGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 7605 0.7 0.494794
Target:  5'- gGCGGuGUucGCCuccuGGCcGGUCGAGAGCCAg -3'
miRNA:   3'- -CGUC-CG--UGGu---UCGaCCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 29388 0.7 0.505181
Target:  5'- --uGGCACCAga-UGGCCGAGGACa- -3'
miRNA:   3'- cguCCGUGGUucgACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 18327 0.7 0.46424
Target:  5'- cGUGGGCGaCGAGCaccUGGCCGAGccuGCCGa -3'
miRNA:   3'- -CGUCCGUgGUUCG---ACCGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 27614 0.7 0.474318
Target:  5'- cCAGcGCAUCGAGaacGGCCAGGAcGCCAu -3'
miRNA:   3'- cGUC-CGUGGUUCga-CCGGUUCU-UGGU- -5'
19118 5' -55.3 NC_004684.1 + 55805 0.7 0.474318
Target:  5'- cCAGGCGCaccggCGGGCUGGUguGGAACUc -3'
miRNA:   3'- cGUCCGUG-----GUUCGACCGguUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 24920 0.7 0.484504
Target:  5'- aCAGGaUGCCgAAGgUGGCCAGGAACg- -3'
miRNA:   3'- cGUCC-GUGG-UUCgACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 9764 0.7 0.484504
Target:  5'- cGCgAGGuCACCGgguGGCUGGCCGu--ACCGc -3'
miRNA:   3'- -CG-UCC-GUGGU---UCGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 19800 0.7 0.494794
Target:  5'- gGCGGGC-CU--GCUGGCCAAGGAg-- -3'
miRNA:   3'- -CGUCCGuGGuuCGACCGGUUCUUggu -5'
19118 5' -55.3 NC_004684.1 + 348 0.69 0.547598
Target:  5'- gGCGGGCaACCAcacccugauGGCcaugcgcgaccUGGCCGAGA-CCGa -3'
miRNA:   3'- -CGUCCG-UGGU---------UCG-----------ACCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 49100 0.69 0.547598
Target:  5'- gGCAGGUGCCAcaggucgccgucGGCgucGGCCuGGAACg- -3'
miRNA:   3'- -CGUCCGUGGU------------UCGa--CCGGuUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 2688 0.69 0.557304
Target:  5'- cCGGGCACCGcauccccGGcCUGGCCGGu-GCCGg -3'
miRNA:   3'- cGUCCGUGGU-------UC-GACCGGUUcuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65983 0.69 0.558386
Target:  5'- gGCAGGCcuCCAGgucGCUGGCCA--GugCAa -3'
miRNA:   3'- -CGUCCGu-GGUU---CGACCGGUucUugGU- -5'
19118 5' -55.3 NC_004684.1 + 65466 0.69 0.558386
Target:  5'- cGCcGGUACCAGGCccggcaGGCCGGGu-CCGg -3'
miRNA:   3'- -CGuCCGUGGUUCGa-----CCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 6387 0.69 0.558386
Target:  5'- cGCAGcGUguugGCgAAGUUGGCCGAGGugUAc -3'
miRNA:   3'- -CGUC-CG----UGgUUCGACCGGUUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 170 0.69 0.569233
Target:  5'- --cGGUgACCGGGUUGGUCGGGAccACCAc -3'
miRNA:   3'- cguCCG-UGGUUCGACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 41324 0.69 0.526229
Target:  5'- gGCuacGGCACCGcgaccgccgacGGCcgGGCCAAG-GCCAc -3'
miRNA:   3'- -CGu--CCGUGGU-----------UCGa-CCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 6181 0.69 0.546523
Target:  5'- gGUAGGCACCGGGCagguacaugucgaUGGCCuccGGcgcgaucucGGCCAg -3'
miRNA:   3'- -CGUCCGUGGUUCG-------------ACCGGu--UC---------UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 18203 0.69 0.515662
Target:  5'- uCGGGUAUCucGCUGGCCAu--GCCGc -3'
miRNA:   3'- cGUCCGUGGuuCGACCGGUucuUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.