miRNA display CGI


Results 1 - 20 of 204 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 779 1.11 0.000735
Target:  5'- cGCAGGCACCAAGCUGGCCAAGAACCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 33109 0.84 0.061955
Target:  5'- cGCAGGCGCuCGcGCUGGCCAAGGugCu -3'
miRNA:   3'- -CGUCCGUG-GUuCGACCGGUUCUugGu -5'
19118 5' -55.3 NC_004684.1 + 22835 0.84 0.067583
Target:  5'- gGCGGuGCagGCCGGGCUGGCCAAG-ACCAg -3'
miRNA:   3'- -CGUC-CG--UGGUUCGACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 11615 0.82 0.08757
Target:  5'- --cGGCACCGAGCUGGCCGucGGCCGc -3'
miRNA:   3'- cguCCGUGGUUCGACCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 39126 0.81 0.09816
Target:  5'- aGCGGccucgcGCACCAGGCUGGCCGGGuccACCGc -3'
miRNA:   3'- -CGUC------CGUGGUUCGACCGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 55443 0.8 0.119652
Target:  5'- cGCAGGUGCCAGGCUGGCgAccauGGCCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGgUuc--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65889 0.8 0.119652
Target:  5'- aGCGcGGCGCgCAGGUUGGCCAccAGGGCCGc -3'
miRNA:   3'- -CGU-CCGUG-GUUCGACCGGU--UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 50040 0.78 0.166902
Target:  5'- gGCcGGUGCCuGGCUccaGGCCAGGAACCGg -3'
miRNA:   3'- -CGuCCGUGGuUCGA---CCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 44893 0.77 0.185555
Target:  5'- uGCugaauGGCACCGAGCgguUGGCCGcugccagGGAACCGg -3'
miRNA:   3'- -CGu----CCGUGGUUCG---ACCGGU-------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 6733 0.76 0.207123
Target:  5'- -aAGGCgacACCuGGCUGGCCcGGAGCCGu -3'
miRNA:   3'- cgUCCG---UGGuUCGACCGGuUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 61167 0.75 0.236324
Target:  5'- gGCcuGGcCGCCcAGCUGGCCGAGAucgcGCCGg -3'
miRNA:   3'- -CGu-CC-GUGGuUCGACCGGUUCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 7703 0.75 0.248939
Target:  5'- cCAGGCcgucGCCGuggcGCUGGCCGuGAGCCAc -3'
miRNA:   3'- cGUCCG----UGGUu---CGACCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 9557 0.75 0.262106
Target:  5'- gGCGGGUACC-GGC-GGCCAgcaccgccGGGACCAg -3'
miRNA:   3'- -CGUCCGUGGuUCGaCCGGU--------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63173 0.74 0.275834
Target:  5'- cGCAGGCGCaugcagucguGGCUGGCgGugaucAGAACCAc -3'
miRNA:   3'- -CGUCCGUGgu--------UCGACCGgU-----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 10091 0.74 0.29013
Target:  5'- cCGGGCA--GGGCUGGCCGGGGugCGg -3'
miRNA:   3'- cGUCCGUggUUCGACCGGUUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 35157 0.74 0.297493
Target:  5'- -uGGGCACCAAcucGgUGGCCGagccGGAACCGg -3'
miRNA:   3'- cgUCCGUGGUU---CgACCGGU----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 46053 0.74 0.305001
Target:  5'- cGCAcGGUcuuGCCGcgcGGCUGGaCCAGGAACCc -3'
miRNA:   3'- -CGU-CCG---UGGU---UCGACC-GGUUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 3843 0.73 0.312652
Target:  5'- gGCAGcgGCCGAGgaGGCCGAGcGCCAc -3'
miRNA:   3'- -CGUCcgUGGUUCgaCCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63362 0.73 0.320449
Target:  5'- cCAGcGCACCGAGC-GGCCGAcGcGCCAg -3'
miRNA:   3'- cGUC-CGUGGUUCGaCCGGUU-CuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 5181 0.73 0.32759
Target:  5'- aGguGGCGCU-GGUUGGCCAGGAcggcaacguguucGCCAu -3'
miRNA:   3'- -CguCCGUGGuUCGACCGGUUCU-------------UGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.