Results 61 - 80 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 43984 | 0.7 | 0.483481 |
Target: 5'- cGCGGGCguacccgGCCAGcugcGUUGGCCAGGucauccacGACCAu -3' miRNA: 3'- -CGUCCG-------UGGUU----CGACCGGUUC--------UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 46961 | 0.7 | 0.484504 |
Target: 5'- uGCAcaGCGCCAGGCUGaugcGCCAGGAGucguCCAg -3' miRNA: 3'- -CGUc-CGUGGUUCGAC----CGGUUCUU----GGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 19543 | 0.7 | 0.484504 |
Target: 5'- uGCGGGUgcGCCGGGCgGuGCCAGGucuCCGg -3' miRNA: 3'- -CGUCCG--UGGUUCGaC-CGGUUCuu-GGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 24920 | 0.7 | 0.484504 |
Target: 5'- aCAGGaUGCCgAAGgUGGCCAGGAACg- -3' miRNA: 3'- cGUCC-GUGG-UUCgACCGGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 9764 | 0.7 | 0.484504 |
Target: 5'- cGCgAGGuCACCGgguGGCUGGCCGu--ACCGc -3' miRNA: 3'- -CG-UCC-GUGGU---UCGACCGGUucuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 38482 | 0.7 | 0.488608 |
Target: 5'- gGCAGGCACCGgcgucAGCaaGGCCAccgacgccgacggcGAGCCGa -3' miRNA: 3'- -CGUCCGUGGU-----UCGa-CCGGUu-------------CUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 7605 | 0.7 | 0.494794 |
Target: 5'- gGCGGuGUucGCCuccuGGCcGGUCGAGAGCCAg -3' miRNA: 3'- -CGUC-CG--UGGu---UCGaCCGGUUCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 19800 | 0.7 | 0.494794 |
Target: 5'- gGCGGGC-CU--GCUGGCCAAGGAg-- -3' miRNA: 3'- -CGUCCGuGGuuCGACCGGUUCUUggu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 29388 | 0.7 | 0.505181 |
Target: 5'- --uGGCACCAga-UGGCCGAGGACa- -3' miRNA: 3'- cguCCGUGGUucgACCGGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 19582 | 0.7 | 0.505181 |
Target: 5'- aGCAGGCACgCcAGUUGuucgccGCCGAGAACa- -3' miRNA: 3'- -CGUCCGUG-GuUCGAC------CGGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 18203 | 0.69 | 0.515662 |
Target: 5'- uCGGGUAUCucGCUGGCCAu--GCCGc -3' miRNA: 3'- cGUCCGUGGuuCGACCGGUucuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 58383 | 0.69 | 0.52305 |
Target: 5'- cGCAcGGCACCGcgcguggaggccuuGGCccGGCCGccGGAACCc -3' miRNA: 3'- -CGU-CCGUGGU--------------UCGa-CCGGU--UCUUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 41324 | 0.69 | 0.526229 |
Target: 5'- gGCuacGGCACCGcgaccgccgacGGCcgGGCCAAG-GCCAc -3' miRNA: 3'- -CGu--CCGUGGU-----------UCGa-CCGGUUCuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 2640 | 0.69 | 0.526229 |
Target: 5'- cGCcuGGCACC-AGCUcGGCCAgcAGGucgGCCAc -3' miRNA: 3'- -CGu-CCGUGGuUCGA-CCGGU--UCU---UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 42056 | 0.69 | 0.526229 |
Target: 5'- -aAGGcCACCGGGgaGGCCGccauacgccgccAGGGCCGa -3' miRNA: 3'- cgUCC-GUGGUUCgaCCGGU------------UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 44236 | 0.69 | 0.536877 |
Target: 5'- aGCAGGCucucGCCaAAGUUGGCCGccgcccGGaAGCCu -3' miRNA: 3'- -CGUCCG----UGG-UUCGACCGGU------UC-UUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 47859 | 0.69 | 0.536877 |
Target: 5'- cCGGcGCACCcgcAGCUGGCguuGAGCCAg -3' miRNA: 3'- cGUC-CGUGGu--UCGACCGguuCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 6181 | 0.69 | 0.546523 |
Target: 5'- gGUAGGCACCGGGCagguacaugucgaUGGCCuccGGcgcgaucucGGCCAg -3' miRNA: 3'- -CGUCCGUGGUUCG-------------ACCGGu--UC---------UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 49100 | 0.69 | 0.547598 |
Target: 5'- gGCAGGUGCCAcaggucgccgucGGCgucGGCCuGGAACg- -3' miRNA: 3'- -CGUCCGUGGU------------UCGa--CCGGuUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 348 | 0.69 | 0.547598 |
Target: 5'- gGCGGGCaACCAcacccugauGGCcaugcgcgaccUGGCCGAGA-CCGa -3' miRNA: 3'- -CGUCCG-UGGU---------UCG-----------ACCGGUUCUuGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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