miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 41950 0.67 0.689982
Target:  5'- gGC-GGCACCAAc--GGCCugGAGGACCGc -3'
miRNA:   3'- -CGuCCGUGGUUcgaCCGG--UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 59339 0.67 0.689982
Target:  5'- aGCc-GCACCcuGCUGGCgCugGAGGACCGc -3'
miRNA:   3'- -CGucCGUGGuuCGACCG-G--UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 62502 0.67 0.689982
Target:  5'- cGguGGCgACCAGGCc-GCCu-GAGCCGc -3'
miRNA:   3'- -CguCCG-UGGUUCGacCGGuuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55447 0.67 0.688893
Target:  5'- cGguGGUcuaugucGCCAAGCgcggugaaggccUGGCCGAGGAUgAa -3'
miRNA:   3'- -CguCCG-------UGGUUCG------------ACCGGUUCUUGgU- -5'
19118 5' -55.3 NC_004684.1 + 32826 0.67 0.683443
Target:  5'- aGCA-GCACCGccagcgcgcucucguAGCUGGCCAu-GGCCu -3'
miRNA:   3'- -CGUcCGUGGU---------------UCGACCGGUucUUGGu -5'
19118 5' -55.3 NC_004684.1 + 44501 0.67 0.683443
Target:  5'- cGCuGGCACCGAcGCgcagcagcucccgaaUGGUCGAGuuCCAg -3'
miRNA:   3'- -CGuCCGUGGUU-CG---------------ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 15317 0.67 0.679073
Target:  5'- cGguGGCAUgGAGCgGGCguuCAAGGccGCCGg -3'
miRNA:   3'- -CguCCGUGgUUCGaCCG---GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 46561 0.67 0.679073
Target:  5'- cCGGG----AAGCUGGCCAGGAACuCAg -3'
miRNA:   3'- cGUCCguggUUCGACCGGUUCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 49123 0.67 0.679073
Target:  5'- aGCAGGCgGCCGGGC-GuGCCGuu-GCCGu -3'
miRNA:   3'- -CGUCCG-UGGUUCGaC-CGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 36258 0.67 0.679073
Target:  5'- aGCAGGUugugcGCCAGGUc-GCCAAGGuccuCCAg -3'
miRNA:   3'- -CGUCCG-----UGGUUCGacCGGUUCUu---GGU- -5'
19118 5' -55.3 NC_004684.1 + 21219 0.67 0.679073
Target:  5'- cGCAGGCGCUucacuucugguGGCgUGGCCGcGAgguguucgugcGCCAg -3'
miRNA:   3'- -CGUCCGUGGu----------UCG-ACCGGUuCU-----------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 57890 0.67 0.679073
Target:  5'- uGCuGGCuggugGCCGGGCugaaggUGGCCGGGcuGACCGc -3'
miRNA:   3'- -CGuCCG-----UGGUUCG------ACCGGUUC--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 17658 0.67 0.679073
Target:  5'- aGCAGGagacaaGCC-AGCaUGGCCGAGuuCCc -3'
miRNA:   3'- -CGUCCg-----UGGuUCG-ACCGGUUCuuGGu -5'
19118 5' -55.3 NC_004684.1 + 13215 0.67 0.679073
Target:  5'- aGCGGGCgACCAgccagaucaauGGCggggaguuccgUGGCCAGGccguGACCGc -3'
miRNA:   3'- -CGUCCG-UGGU-----------UCG-----------ACCGGUUC----UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 5269 0.67 0.679073
Target:  5'- -gAGGcCACCAAGCgcaaGGUUggGGAUCGu -3'
miRNA:   3'- cgUCC-GUGGUUCGa---CCGGuuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 244 0.67 0.66812
Target:  5'- cGCGGuaaCACCGAGCUGaucGCCAAcAGCCu -3'
miRNA:   3'- -CGUCc--GUGGUUCGAC---CGGUUcUUGGu -5'
19118 5' -55.3 NC_004684.1 + 48889 0.67 0.66812
Target:  5'- cCGGGaCGCCGAaCUGGCCGAGu-UCAg -3'
miRNA:   3'- cGUCC-GUGGUUcGACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 36481 0.67 0.66812
Target:  5'- uGC-GGCACCGGGUUcgacaucggcaaGGCCGGGAcgcugaGCCu -3'
miRNA:   3'- -CGuCCGUGGUUCGA------------CCGGUUCU------UGGu -5'
19118 5' -55.3 NC_004684.1 + 34936 0.67 0.66812
Target:  5'- cGCAGGUugcccGCCGAGUUcGaGUCGAGGugCAu -3'
miRNA:   3'- -CGUCCG-----UGGUUCGA-C-CGGUUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 66387 0.67 0.66812
Target:  5'- cGCGGuggaaaucuccGCACCuugguGCuUGGCCGAGAACg- -3'
miRNA:   3'- -CGUC-----------CGUGGuu---CG-ACCGGUUCUUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.