miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 170 0.69 0.569233
Target:  5'- --cGGUgACCGGGUUGGUCGGGAccACCAc -3'
miRNA:   3'- cguCCG-UGGUUCGACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 244 0.67 0.66812
Target:  5'- cGCGGuaaCACCGAGCUGaucGCCAAcAGCCu -3'
miRNA:   3'- -CGUCc--GUGGUUCGAC---CGGUUcUUGGu -5'
19118 5' -55.3 NC_004684.1 + 348 0.69 0.547598
Target:  5'- gGCGGGCaACCAcacccugauGGCcaugcgcgaccUGGCCGAGA-CCGa -3'
miRNA:   3'- -CGUCCG-UGGU---------UCG-----------ACCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 557 0.66 0.711621
Target:  5'- -aGGGCACCGGGUUuGaCGAGGACUAc -3'
miRNA:   3'- cgUCCGUGGUUCGAcCgGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 779 1.11 0.000735
Target:  5'- cGCAGGCACCAAGCUGGCCAAGAACCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 1430 0.66 0.722328
Target:  5'- cCGGGCcaagguccagGCCGAGCUGGaCCAccuGGucgaGACCGg -3'
miRNA:   3'- cGUCCG----------UGGUUCGACC-GGU---UC----UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 1650 0.68 0.580132
Target:  5'- --cGGCGCcCAAGUggGGCCAgcucgacucccuGGAACCGa -3'
miRNA:   3'- cguCCGUG-GUUCGa-CCGGU------------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 1731 0.69 0.558386
Target:  5'- cGCAGGCcuacucgggACCGGGUaGGUCGGGA-CCGg -3'
miRNA:   3'- -CGUCCG---------UGGUUCGaCCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 2640 0.69 0.526229
Target:  5'- cGCcuGGCACC-AGCUcGGCCAgcAGGucgGCCAc -3'
miRNA:   3'- -CGu-CCGUGGuUCGA-CCGGU--UCU---UGGU- -5'
19118 5' -55.3 NC_004684.1 + 2688 0.69 0.557304
Target:  5'- cCGGGCACCGcauccccGGcCUGGCCGGu-GCCGg -3'
miRNA:   3'- cGUCCGUGGU-------UC-GACCGGUUcuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 3142 0.67 0.646122
Target:  5'- uGguGuGCGCCAacacccAGCgccUGGCCGAG-GCCAa -3'
miRNA:   3'- -CguC-CGUGGU------UCG---ACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 3414 0.66 0.753865
Target:  5'- gGCAcccuGGCACC--GCUGGCCGccacagucagcGGcACCAc -3'
miRNA:   3'- -CGU----CCGUGGuuCGACCGGU-----------UCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 3843 0.73 0.312652
Target:  5'- gGCAGcgGCCGAGgaGGCCGAGcGCCAc -3'
miRNA:   3'- -CGUCcgUGGUUCgaCCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 3888 0.66 0.753865
Target:  5'- cCAGGcCGCCcuGCUGGCgCAGGcGCa- -3'
miRNA:   3'- cGUCC-GUGGuuCGACCG-GUUCuUGgu -5'
19118 5' -55.3 NC_004684.1 + 4862 0.66 0.743462
Target:  5'- uGCuGGCcagcgACCAGGCUGaCUggGAcACCAa -3'
miRNA:   3'- -CGuCCG-----UGGUUCGACcGGuuCU-UGGU- -5'
19118 5' -55.3 NC_004684.1 + 5181 0.73 0.32759
Target:  5'- aGguGGCGCU-GGUUGGCCAGGAcggcaacguguucGCCAu -3'
miRNA:   3'- -CguCCGUGGuUCGACCGGUUCU-------------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 5269 0.67 0.679073
Target:  5'- -gAGGcCACCAAGCgcaaGGUUggGGAUCGu -3'
miRNA:   3'- cgUCC-GUGGUUCGa---CCGGuuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 5604 0.67 0.657132
Target:  5'- --cGGgGCCGAGCUGGCgCGcauggugcuGGAGCUg -3'
miRNA:   3'- cguCCgUGGUUCGACCG-GU---------UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 5779 0.67 0.646122
Target:  5'- cGCAGcgcgcuacuGCGCCAGGCgugcgaGGUCGGGAcguGCCGc -3'
miRNA:   3'- -CGUC---------CGUGGUUCGa-----CCGGUUCU---UGGU- -5'
19118 5' -55.3 NC_004684.1 + 5826 0.66 0.700835
Target:  5'- cGUGGaGUA-CAAGCUGGCgguguuCGAGGACCAg -3'
miRNA:   3'- -CGUC-CGUgGUUCGACCG------GUUCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.