miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 11615 0.82 0.08757
Target:  5'- --cGGCACCGAGCUGGCCGucGGCCGc -3'
miRNA:   3'- cguCCGUGGUUCGACCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 11911 0.67 0.69433
Target:  5'- uGCGcGGCACCAccgAcagccagggccguccGCUGGCCAuGGucGCCAg -3'
miRNA:   3'- -CGU-CCGUGGU---U---------------CGACCGGUuCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 12979 0.72 0.361597
Target:  5'- gGCAGGCaacACCGAGCgccgGGCCGGGugGAUUAu -3'
miRNA:   3'- -CGUCCG---UGGUUCGa---CCGGUUC--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 13215 0.67 0.679073
Target:  5'- aGCGGGCgACCAgccagaucaauGGCggggaguuccgUGGCCAGGccguGACCGc -3'
miRNA:   3'- -CGUCCG-UGGU-----------UCG-----------ACCGGUUC----UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 13384 0.67 0.66812
Target:  5'- uGguGGUGuCC--GCUGGCCGAuuGAGCCGg -3'
miRNA:   3'- -CguCCGU-GGuuCGACCGGUU--CUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 13582 0.73 0.353081
Target:  5'- gGCGGGCauucuccaggACCAgGGCUGGCC-GGAACUc -3'
miRNA:   3'- -CGUCCG----------UGGU-UCGACCGGuUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 14700 0.69 0.569233
Target:  5'- aCGGGCGCgAGGacCUGGCCAAccGggUCAa -3'
miRNA:   3'- cGUCCGUGgUUC--GACCGGUU--CuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 15317 0.67 0.679073
Target:  5'- cGguGGCAUgGAGCgGGCguuCAAGGccGCCGg -3'
miRNA:   3'- -CguCCGUGgUUCGaCCG---GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 15579 0.72 0.387993
Target:  5'- cGCAGcGCGCgCGGcCUGGCCGuGGACCGg -3'
miRNA:   3'- -CGUC-CGUG-GUUcGACCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 15773 0.72 0.397069
Target:  5'- -aGGuGCGCCGAGCgcGGCCAAGGaacACCu -3'
miRNA:   3'- cgUC-CGUGGUUCGa-CCGGUUCU---UGGu -5'
19118 5' -55.3 NC_004684.1 + 17021 0.66 0.711621
Target:  5'- ---cGCACCGAGCgGGUgAAGAacGCCGc -3'
miRNA:   3'- cgucCGUGGUUCGaCCGgUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 17362 0.66 0.753865
Target:  5'- cCAGGCACCGGccacGCUGccGCCGAcGGugCGc -3'
miRNA:   3'- cGUCCGUGGUU----CGAC--CGGUU-CUugGU- -5'
19118 5' -55.3 NC_004684.1 + 17658 0.67 0.679073
Target:  5'- aGCAGGagacaaGCC-AGCaUGGCCGAGuuCCc -3'
miRNA:   3'- -CGUCCg-----UGGuUCG-ACCGGUUCuuGGu -5'
19118 5' -55.3 NC_004684.1 + 17962 0.66 0.722328
Target:  5'- gGCAacGGCACCAAGaccaUGuCCAAGcuCCAg -3'
miRNA:   3'- -CGU--CCGUGGUUCg---ACcGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 18100 0.69 0.558386
Target:  5'- gGCaAGGcCACCGAGCgcgaGGCCGguguGGAcaccGCCAa -3'
miRNA:   3'- -CG-UCC-GUGGUUCGa---CCGGU----UCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 18182 0.66 0.743462
Target:  5'- --cGGCACCGAccGaCUGGCCGAccGAGCa- -3'
miRNA:   3'- cguCCGUGGUU--C-GACCGGUU--CUUGgu -5'
19118 5' -55.3 NC_004684.1 + 18203 0.69 0.515662
Target:  5'- uCGGGUAUCucGCUGGCCAu--GCCGc -3'
miRNA:   3'- cGUCCGUGGuuCGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 18327 0.7 0.46424
Target:  5'- cGUGGGCGaCGAGCaccUGGCCGAGccuGCCGa -3'
miRNA:   3'- -CGUCCGUgGUUCG---ACCGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 18505 0.66 0.700835
Target:  5'- cGCuGGGCAguUCAAGCUGGCggucaacggCAAGGucACCGa -3'
miRNA:   3'- -CG-UCCGU--GGUUCGACCG---------GUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 18782 0.73 0.336476
Target:  5'- cGCAcGGCACCGAGgUGGgCAAuGACCu -3'
miRNA:   3'- -CGU-CCGUGGUUCgACCgGUUcUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.