miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 19543 0.7 0.484504
Target:  5'- uGCGGGUgcGCCGGGCgGuGCCAGGucuCCGg -3'
miRNA:   3'- -CGUCCG--UGGUUCGaC-CGGUUCuu-GGU- -5'
19118 5' -55.3 NC_004684.1 + 19582 0.7 0.505181
Target:  5'- aGCAGGCACgCcAGUUGuucgccGCCGAGAACa- -3'
miRNA:   3'- -CGUCCGUG-GuUCGAC------CGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 19685 0.68 0.60205
Target:  5'- gGCGcGGCGgCAAGgcCUGGCCGAGccaaGACCu -3'
miRNA:   3'- -CGU-CCGUgGUUC--GACCGGUUC----UUGGu -5'
19118 5' -55.3 NC_004684.1 + 19800 0.7 0.494794
Target:  5'- gGCGGGC-CU--GCUGGCCAAGGAg-- -3'
miRNA:   3'- -CGUCCGuGGuuCGACCGGUUCUUggu -5'
19118 5' -55.3 NC_004684.1 + 19990 0.66 0.722328
Target:  5'- aGCAGGCACCGG--UGGUCcuGuGACCGc -3'
miRNA:   3'- -CGUCCGUGGUUcgACCGGuuC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 20874 0.67 0.635098
Target:  5'- uGCAGGCAaguCCAccgucaucggcaAGCUGGCCu----CCAa -3'
miRNA:   3'- -CGUCCGU---GGU------------UCGACCGGuucuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 20969 0.67 0.635098
Target:  5'- cCAGauGCGCCGGgacauGCUGGCCGuGGACCc -3'
miRNA:   3'- cGUC--CGUGGUU-----CGACCGGUuCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 21219 0.67 0.679073
Target:  5'- cGCAGGCGCUucacuucugguGGCgUGGCCGcGAgguguucgugcGCCAg -3'
miRNA:   3'- -CGUCCGUGGu----------UCG-ACCGGUuCU-----------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 22255 0.7 0.461239
Target:  5'- cGCAGGCGCgAgcaugggaccgccuGGCggcGGCCAAGGcCCGc -3'
miRNA:   3'- -CGUCCGUGgU--------------UCGa--CCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 22835 0.84 0.067583
Target:  5'- gGCGGuGCagGCCGGGCUGGCCAAG-ACCAg -3'
miRNA:   3'- -CGUC-CG--UGGUUCGACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 22869 0.67 0.646122
Target:  5'- cCGGGcCACCAcGGC-GGCCAAGAcGCUg -3'
miRNA:   3'- cGUCC-GUGGU-UCGaCCGGUUCU-UGGu -5'
19118 5' -55.3 NC_004684.1 + 22934 0.67 0.635098
Target:  5'- cGCAGGUgGCCAgcgugcucAGCUGGUCGAcuacgccaccGGGCCGg -3'
miRNA:   3'- -CGUCCG-UGGU--------UCGACCGGUU----------CUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 23056 0.72 0.379055
Target:  5'- --cGGCcugGCCAAGCUGGCCA---ACCGg -3'
miRNA:   3'- cguCCG---UGGUUCGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 23139 0.67 0.646122
Target:  5'- -aAGGCuuCCGGGCggcGGCCAacuuuggcgAGAGCCu -3'
miRNA:   3'- cgUCCGu-GGUUCGa--CCGGU---------UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 23646 0.66 0.711621
Target:  5'- uGCuGGCACCGcuGCUGaCCGGGuacACCGa -3'
miRNA:   3'- -CGuCCGUGGUu-CGACcGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 23846 0.66 0.753865
Target:  5'- -aAGGCcaagGCCGAGUgggaGGCCcagugggagGAGGACCAc -3'
miRNA:   3'- cgUCCG----UGGUUCGa---CCGG---------UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 24777 0.67 0.635098
Target:  5'- --cGGCACCGGgccGCUGGUCGAuacGGCCAa -3'
miRNA:   3'- cguCCGUGGUU---CGACCGGUUc--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 24920 0.7 0.484504
Target:  5'- aCAGGaUGCCgAAGgUGGCCAGGAACg- -3'
miRNA:   3'- cGUCC-GUGG-UUCgACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 25260 0.67 0.646122
Target:  5'- -aAGGCGCUggagAAGCUGcgcaCCAAGGGCCu -3'
miRNA:   3'- cgUCCGUGG----UUCGACc---GGUUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 25949 0.71 0.437606
Target:  5'- -aAGGUgcccaacGCCGAGCUGGCCAAGcuggugcgcgaaggcAACCc -3'
miRNA:   3'- cgUCCG-------UGGUUCGACCGGUUC---------------UUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.