miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 67081 0.66 0.732946
Target:  5'- uGCGGGCguugGCCucGGC-GGCCAGcGAACUc -3'
miRNA:   3'- -CGUCCG----UGGu-UCGaCCGGUU-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 67025 0.68 0.613053
Target:  5'- --cGGCACCAcgauGGcCUGGCCAccGAGCUg -3'
miRNA:   3'- cguCCGUGGU----UC-GACCGGUu-CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 66689 0.68 0.591074
Target:  5'- cCAGGCcguccACCGgcGGCUgaccucggGGCCGAGGAUCAg -3'
miRNA:   3'- cGUCCG-----UGGU--UCGA--------CCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 66387 0.67 0.66812
Target:  5'- cGCGGuggaaaucuccGCACCuugguGCuUGGCCGAGAACg- -3'
miRNA:   3'- -CGUC-----------CGUGGuu---CG-ACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 65983 0.69 0.558386
Target:  5'- gGCAGGCcuCCAGgucGCUGGCCA--GugCAa -3'
miRNA:   3'- -CGUCCGu-GGUU---CGACCGGUucUugGU- -5'
19118 5' -55.3 NC_004684.1 + 65889 0.8 0.119652
Target:  5'- aGCGcGGCGCgCAGGUUGGCCAccAGGGCCGc -3'
miRNA:   3'- -CGU-CCGUG-GUUCGACCGGU--UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65573 0.66 0.722328
Target:  5'- cGCAGGUcaGCCGccauGGCcucGGUCAuGAGCCGc -3'
miRNA:   3'- -CGUCCG--UGGU----UCGa--CCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65466 0.69 0.558386
Target:  5'- cGCcGGUACCAGGCccggcaGGCCGGGu-CCGg -3'
miRNA:   3'- -CGuCCGUGGUUCGa-----CCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 65328 0.7 0.471283
Target:  5'- gGCcaGCGCCAGGCaGGCCAcgauggcggcccccAGGGCCAc -3'
miRNA:   3'- -CGucCGUGGUUCGaCCGGU--------------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65214 0.67 0.657132
Target:  5'- uGC-GGCACCucGCgGGCCAu-GACCGu -3'
miRNA:   3'- -CGuCCGUGGuuCGaCCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 64930 0.68 0.580132
Target:  5'- gGUAcGGCacGCCGAGCUGGCCGc---CCAg -3'
miRNA:   3'- -CGU-CCG--UGGUUCGACCGGUucuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 64729 0.68 0.580132
Target:  5'- uCGGGUccaucuugugGCCGAccuGCUGGCCGAGcugguGCCAg -3'
miRNA:   3'- cGUCCG----------UGGUU---CGACCGGUUCu----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 64617 0.68 0.580132
Target:  5'- cGCuGGCGuCCAGGCUGGaCAccuGGAACg- -3'
miRNA:   3'- -CGuCCGU-GGUUCGACCgGU---UCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 63894 0.66 0.753865
Target:  5'- aGC-GGUGCCAGG-UGGuCCAGGuACCGg -3'
miRNA:   3'- -CGuCCGUGGUUCgACC-GGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63749 0.68 0.624072
Target:  5'- --cGGCACCGGGC-GGCCAcuAGuuugcGGCCGa -3'
miRNA:   3'- cguCCGUGGUUCGaCCGGU--UC-----UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63362 0.73 0.320449
Target:  5'- cCAGcGCACCGAGC-GGCCGAcGcGCCAg -3'
miRNA:   3'- cGUC-CGUGGUUCGaCCGGUU-CuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63173 0.74 0.275834
Target:  5'- cGCAGGCGCaugcagucguGGCUGGCgGugaucAGAACCAc -3'
miRNA:   3'- -CGUCCGUGgu--------UCGACCGgU-----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 62982 0.67 0.646122
Target:  5'- uGguGcGCACguGGCcggUGGCCGGGAACgCGa -3'
miRNA:   3'- -CguC-CGUGguUCG---ACCGGUUCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 62968 0.67 0.66812
Target:  5'- aGCAGGC-CCGcgcguuguuccGGC-GGCCAGGAcuuGCUg -3'
miRNA:   3'- -CGUCCGuGGU-----------UCGaCCGGUUCU---UGGu -5'
19118 5' -55.3 NC_004684.1 + 62502 0.67 0.689982
Target:  5'- cGguGGCgACCAGGCc-GCCu-GAGCCGc -3'
miRNA:   3'- -CguCCG-UGGUUCGacCGGuuCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.