miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 61534 0.67 0.646122
Target:  5'- uGCAGGCGCUGgcgugccgcuGGUUGGUCcGGGugCGg -3'
miRNA:   3'- -CGUCCGUGGU----------UCGACCGGuUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 61167 0.75 0.236324
Target:  5'- gGCcuGGcCGCCcAGCUGGCCGAGAucgcGCCGg -3'
miRNA:   3'- -CGu-CC-GUGGuUCGACCGGUUCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 60692 0.68 0.60205
Target:  5'- uGCucGCGCCGAcGgUGGCCAGGucGACCu -3'
miRNA:   3'- -CGucCGUGGUU-CgACCGGUUC--UUGGu -5'
19118 5' -55.3 NC_004684.1 + 60499 0.72 0.379055
Target:  5'- cGCAGGCgcACCAGGUUGacgaccucGCCccAGAGCCAg -3'
miRNA:   3'- -CGUCCG--UGGUUCGAC--------CGGu-UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 59339 0.67 0.689982
Target:  5'- aGCc-GCACCcuGCUGGCgCugGAGGACCGc -3'
miRNA:   3'- -CGucCGUGGuuCGACCG-G--UUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 58530 0.69 0.547598
Target:  5'- aGCAGGCGCuCAGGCgacacguccaGGCCcauGGCCAg -3'
miRNA:   3'- -CGUCCGUG-GUUCGa---------CCGGuucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 58383 0.69 0.52305
Target:  5'- cGCAcGGCACCGcgcguggaggccuuGGCccGGCCGccGGAACCc -3'
miRNA:   3'- -CGU-CCGUGGU--------------UCGa-CCGGU--UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 58100 0.72 0.397069
Target:  5'- -gAGcGCGCCGAGCaUGGCCGGGu-CCGc -3'
miRNA:   3'- cgUC-CGUGGUUCG-ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 57979 0.68 0.624072
Target:  5'- cGC-GGCuguCCAGGCUGGCCu-GAucGCUg -3'
miRNA:   3'- -CGuCCGu--GGUUCGACCGGuuCU--UGGu -5'
19118 5' -55.3 NC_004684.1 + 57966 0.71 0.415624
Target:  5'- gGCuGGUGCgCAcgcuGCUGGCCGAGGACa- -3'
miRNA:   3'- -CGuCCGUG-GUu---CGACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 57890 0.67 0.679073
Target:  5'- uGCuGGCuggugGCCGGGCugaaggUGGCCGGGcuGACCGc -3'
miRNA:   3'- -CGuCCG-----UGGUUCG------ACCGGUUC--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 57680 0.7 0.463239
Target:  5'- aGCAGGUggccaucgGCCAGGCaUGGCUgcgcaacGAGAugGCCAa -3'
miRNA:   3'- -CGUCCG--------UGGUUCG-ACCGG-------UUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 57203 0.67 0.646122
Target:  5'- cGCuGGCGCUggGC-GGUCuGGAACUc -3'
miRNA:   3'- -CGuCCGUGGuuCGaCCGGuUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 57070 0.71 0.432771
Target:  5'- gGCAGGCACCAccuggaacgAGgUGGCCGcccgcaugcacuGGACCu -3'
miRNA:   3'- -CGUCCGUGGU---------UCgACCGGUu-----------CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 56884 0.66 0.743462
Target:  5'- gGCcccGCACCuuggcGAGgaGGCCAAGGccGCCAu -3'
miRNA:   3'- -CGuc-CGUGG-----UUCgaCCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 56429 0.66 0.732946
Target:  5'- uCGGGguCCAAGgaGGCCGcc-ACCAc -3'
miRNA:   3'- cGUCCguGGUUCgaCCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55874 0.68 0.624072
Target:  5'- cCAGGCccACCGAGC-GuGCCGGGAGucCCAg -3'
miRNA:   3'- cGUCCG--UGGUUCGaC-CGGUUCUU--GGU- -5'
19118 5' -55.3 NC_004684.1 + 55856 0.68 0.60205
Target:  5'- uGCAGuGCgacgucgacGCCAAGgUGGCCGGGGcauggACCu -3'
miRNA:   3'- -CGUC-CG---------UGGUUCgACCGGUUCU-----UGGu -5'
19118 5' -55.3 NC_004684.1 + 55805 0.7 0.474318
Target:  5'- cCAGGCGCaccggCGGGCUGGUguGGAACUc -3'
miRNA:   3'- cGUCCGUG-----GUUCGACCGguUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 55670 0.71 0.40628
Target:  5'- gGCGGcGCACCAGcuGCUGGaCCuacuuuuGGACCAg -3'
miRNA:   3'- -CGUC-CGUGGUU--CGACC-GGuu-----CUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.