miRNA display CGI


Results 41 - 60 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 55556 0.67 0.689982
Target:  5'- cGCuGGcCGCCGuGGCccggUGGCCGGGGGuCCAg -3'
miRNA:   3'- -CGuCC-GUGGU-UCG----ACCGGUUCUU-GGU- -5'
19118 5' -55.3 NC_004684.1 + 55447 0.67 0.688893
Target:  5'- cGguGGUcuaugucGCCAAGCgcggugaaggccUGGCCGAGGAUgAa -3'
miRNA:   3'- -CguCCG-------UGGUUCG------------ACCGGUUCUUGgU- -5'
19118 5' -55.3 NC_004684.1 + 55443 0.8 0.119652
Target:  5'- cGCAGGUGCCAGGCUGGCgAccauGGCCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGgUuc--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55363 0.68 0.624072
Target:  5'- uGCAGuacaGCAgugaCAAGCUGGCCcGGAucgcGCCGg -3'
miRNA:   3'- -CGUC----CGUg---GUUCGACCGGuUCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 54630 0.73 0.344707
Target:  5'- cGCAGGCgcaGCCGcGCgGGCCAAGAgggcgucgACCu -3'
miRNA:   3'- -CGUCCG---UGGUuCGaCCGGUUCU--------UGGu -5'
19118 5' -55.3 NC_004684.1 + 54489 0.66 0.743462
Target:  5'- cGCAccGGCACC--GCUGGCgGcGAGCgCAg -3'
miRNA:   3'- -CGU--CCGUGGuuCGACCGgUuCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 54193 0.71 0.434701
Target:  5'- aGCAGGCGCaaaccGGCggccugcucggGGCCGAGGucgGCCAg -3'
miRNA:   3'- -CGUCCGUGgu---UCGa----------CCGGUUCU---UGGU- -5'
19118 5' -55.3 NC_004684.1 + 53823 0.66 0.742415
Target:  5'- uGCGGGCGugcgcuuCCAGGCUGGagu-GcAACCAg -3'
miRNA:   3'- -CGUCCGU-------GGUUCGACCgguuC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53756 0.66 0.753865
Target:  5'- cGCAGGUGCgCGgcGGCgaacGuGCgCAGGAACCAc -3'
miRNA:   3'- -CGUCCGUG-GU--UCGa---C-CG-GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53729 0.73 0.328391
Target:  5'- gGCAuGGUGCCGGGUUcgacGGCCAGGAacACCGa -3'
miRNA:   3'- -CGU-CCGUGGUUCGA----CCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 53669 0.68 0.624072
Target:  5'- cGCAGGCGCaCAcgGGUgGGCC-GGAACa- -3'
miRNA:   3'- -CGUCCGUG-GU--UCGaCCGGuUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 53406 0.71 0.444428
Target:  5'- cCAGGUgGCCGGGCUGGCCu-GcGCCGc -3'
miRNA:   3'- cGUCCG-UGGUUCGACCGGuuCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53185 0.73 0.328391
Target:  5'- aCAGGCcgACCGcgccGCUGGCCAGGAAUg- -3'
miRNA:   3'- cGUCCG--UGGUu---CGACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 52970 0.66 0.710546
Target:  5'- gGCGacGUACCGGucacgucgaagucGCUGGCCGAGuAACCGu -3'
miRNA:   3'- -CGUc-CGUGGUU-------------CGACCGGUUC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 52512 0.68 0.613053
Target:  5'- uGCAuguGGCAguUCAAGCcGGUguGGAGCCAg -3'
miRNA:   3'- -CGU---CCGU--GGUUCGaCCGguUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 52123 0.68 0.624072
Target:  5'- uGguGGcCACCAGgguGUUGGCCAG--GCCAu -3'
miRNA:   3'- -CguCC-GUGGUU---CGACCGGUUcuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 51459 0.66 0.711621
Target:  5'- uGUAGGCcccGCCAGGCUccgGuGCCGGGuaGGCCu -3'
miRNA:   3'- -CGUCCG---UGGUUCGA---C-CGGUUC--UUGGu -5'
19118 5' -55.3 NC_004684.1 + 50613 0.72 0.397069
Target:  5'- gGCGGGuCAUC-GGCgUGGCCGacacAGAACCAg -3'
miRNA:   3'- -CGUCC-GUGGuUCG-ACCGGU----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 50040 0.78 0.166902
Target:  5'- gGCcGGUGCCuGGCUccaGGCCAGGAACCGg -3'
miRNA:   3'- -CGuCCGUGGuUCGA---CCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 49605 0.71 0.40628
Target:  5'- cGCAGGCGUCGuugcGGCUGGCCGGuguCCAg -3'
miRNA:   3'- -CGUCCGUGGU----UCGACCGGUUcuuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.