miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 49123 0.67 0.679073
Target:  5'- aGCAGGCgGCCGGGC-GuGCCGuu-GCCGu -3'
miRNA:   3'- -CGUCCG-UGGUUCGaC-CGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 49100 0.69 0.547598
Target:  5'- gGCAGGUGCCAcaggucgccgucGGCgucGGCCuGGAACg- -3'
miRNA:   3'- -CGUCCGUGGU------------UCGa--CCGGuUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 49039 0.68 0.613053
Target:  5'- cGCAGGCuccuccuccucGgCAGGCUcGGCCAGGuGCUc -3'
miRNA:   3'- -CGUCCG-----------UgGUUCGA-CCGGUUCuUGGu -5'
19118 5' -55.3 NC_004684.1 + 48979 0.73 0.344707
Target:  5'- gGCGGGCgcgucgguGCCcuGCUGGCCGGGcccGACCc -3'
miRNA:   3'- -CGUCCG--------UGGuuCGACCGGUUC---UUGGu -5'
19118 5' -55.3 NC_004684.1 + 48889 0.67 0.66812
Target:  5'- cCGGGaCGCCGAaCUGGCCGAGu-UCAg -3'
miRNA:   3'- cGUCC-GUGGUUcGACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 48778 0.66 0.732946
Target:  5'- uGCcGaCGCCGGGCgGGCCGAuGAugCAg -3'
miRNA:   3'- -CGuCcGUGGUUCGaCCGGUU-CUugGU- -5'
19118 5' -55.3 NC_004684.1 + 48393 0.71 0.425099
Target:  5'- aGCGaccuGCG-CGAGCUGGCCGAGAuuGCCGc -3'
miRNA:   3'- -CGUc---CGUgGUUCGACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 47859 0.69 0.536877
Target:  5'- cCGGcGCACCcgcAGCUGGCguuGAGCCAg -3'
miRNA:   3'- cGUC-CGUGGu--UCGACCGguuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 47630 0.69 0.547598
Target:  5'- gGCGGGCACC-GGCaGGCCGcgcAGGuACUg -3'
miRNA:   3'- -CGUCCGUGGuUCGaCCGGU---UCU-UGGu -5'
19118 5' -55.3 NC_004684.1 + 47377 0.68 0.580132
Target:  5'- uCAGGCACCAcggccuccGGUgcGGUCAcAGGACCAc -3'
miRNA:   3'- cGUCCGUGGU--------UCGa-CCGGU-UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 47335 0.71 0.444428
Target:  5'- uGUGGGCGUCGAGCaUGGCCAccaggccacgguAGGACCc -3'
miRNA:   3'- -CGUCCGUGGUUCG-ACCGGU------------UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 47164 0.68 0.591074
Target:  5'- -aGGaGCACCGuAGCggcGGCCAGGGccGCCGc -3'
miRNA:   3'- cgUC-CGUGGU-UCGa--CCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 46961 0.7 0.484504
Target:  5'- uGCAcaGCGCCAGGCUGaugcGCCAGGAGucguCCAg -3'
miRNA:   3'- -CGUc-CGUGGUUCGAC----CGGUUCUU----GGU- -5'
19118 5' -55.3 NC_004684.1 + 46561 0.67 0.679073
Target:  5'- cCGGG----AAGCUGGCCAGGAACuCAg -3'
miRNA:   3'- cGUCCguggUUCGACCGGUUCUUG-GU- -5'
19118 5' -55.3 NC_004684.1 + 46053 0.74 0.305001
Target:  5'- cGCAcGGUcuuGCCGcgcGGCUGGaCCAGGAACCc -3'
miRNA:   3'- -CGU-CCG---UGGU---UCGACC-GGUUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 45227 0.67 0.657132
Target:  5'- uGC-GGCGCUugguGCUGGUCAGGcccggcAGCCAg -3'
miRNA:   3'- -CGuCCGUGGuu--CGACCGGUUC------UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 45169 0.67 0.656032
Target:  5'- cGCGGGUGCCGucgcgcaGGgaGGCCAccuGcGCCAg -3'
miRNA:   3'- -CGUCCGUGGU-------UCgaCCGGUu--CuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 44981 0.69 0.558386
Target:  5'- -gAGGC-CCAgcgGGCUGGUUAGGAAUCc -3'
miRNA:   3'- cgUCCGuGGU---UCGACCGGUUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 44893 0.77 0.185555
Target:  5'- uGCugaauGGCACCGAGCgguUGGCCGcugccagGGAACCGg -3'
miRNA:   3'- -CGu----CCGUGGUUCG---ACCGGU-------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 44501 0.67 0.683443
Target:  5'- cGCuGGCACCGAcGCgcagcagcucccgaaUGGUCGAGuuCCAg -3'
miRNA:   3'- -CGuCCGUGGUU-CG---------------ACCGGUUCuuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.