miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 58100 0.72 0.397069
Target:  5'- -gAGcGCGCCGAGCaUGGCCGGGu-CCGc -3'
miRNA:   3'- cgUC-CGUGGUUCG-ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 48979 0.73 0.344707
Target:  5'- gGCGGGCgcgucgguGCCcuGCUGGCCGGGcccGACCc -3'
miRNA:   3'- -CGUCCG--------UGGuuCGACCGGUUC---UUGGu -5'
19118 5' -55.3 NC_004684.1 + 41044 0.73 0.352237
Target:  5'- cGCAcGGCACUAcaccgacgaaggcAGCUGGaCCGAGGACa- -3'
miRNA:   3'- -CGU-CCGUGGU-------------UCGACC-GGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 36223 0.73 0.353081
Target:  5'- aGCGuGGcCACCGccgagaccgcuGGCgUGGCCAAGAGCUAu -3'
miRNA:   3'- -CGU-CC-GUGGU-----------UCG-ACCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 10388 0.73 0.353081
Target:  5'- cCGGGUACCAGGCc-GCCAgcgugcAGAACCAc -3'
miRNA:   3'- cGUCCGUGGUUCGacCGGU------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 13582 0.73 0.353081
Target:  5'- gGCGGGCauucuccaggACCAgGGCUGGCC-GGAACUc -3'
miRNA:   3'- -CGUCCG----------UGGU-UCGACCGGuUCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 10262 0.72 0.361597
Target:  5'- aGCGGGCcaACCAA-CUGGCCAGcGAcGCCGg -3'
miRNA:   3'- -CGUCCG--UGGUUcGACCGGUU-CU-UGGU- -5'
19118 5' -55.3 NC_004684.1 + 12979 0.72 0.361597
Target:  5'- gGCAGGCaacACCGAGCgccgGGCCGGGugGAUUAu -3'
miRNA:   3'- -CGUCCG---UGGUUCGa---CCGGUUC--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 23056 0.72 0.379055
Target:  5'- --cGGCcugGCCAAGCUGGCCA---ACCGg -3'
miRNA:   3'- cguCCG---UGGUUCGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53729 0.73 0.328391
Target:  5'- gGCAuGGUGCCGGGUUcgacGGCCAGGAacACCGa -3'
miRNA:   3'- -CGU-CCGUGGUUCGA----CCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 53185 0.73 0.328391
Target:  5'- aCAGGCcgACCGcgccGCUGGCCAGGAAUg- -3'
miRNA:   3'- cGUCCG--UGGUu---CGACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 63362 0.73 0.320449
Target:  5'- cCAGcGCACCGAGC-GGCCGAcGcGCCAg -3'
miRNA:   3'- cGUC-CGUGGUUCGaCCGGUU-CuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 22835 0.84 0.067583
Target:  5'- gGCGGuGCagGCCGGGCUGGCCAAG-ACCAg -3'
miRNA:   3'- -CGUC-CG--UGGUUCGACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 11615 0.82 0.08757
Target:  5'- --cGGCACCGAGCUGGCCGucGGCCGc -3'
miRNA:   3'- cguCCGUGGUUCGACCGGUucUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 65889 0.8 0.119652
Target:  5'- aGCGcGGCGCgCAGGUUGGCCAccAGGGCCGc -3'
miRNA:   3'- -CGU-CCGUG-GUUCGACCGGU--UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 50040 0.78 0.166902
Target:  5'- gGCcGGUGCCuGGCUccaGGCCAGGAACCGg -3'
miRNA:   3'- -CGuCCGUGGuUCGA---CCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 6733 0.76 0.207123
Target:  5'- -aAGGCgacACCuGGCUGGCCcGGAGCCGu -3'
miRNA:   3'- cgUCCG---UGGuUCGACCGGuUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 7703 0.75 0.248939
Target:  5'- cCAGGCcgucGCCGuggcGCUGGCCGuGAGCCAc -3'
miRNA:   3'- cGUCCG----UGGUu---CGACCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 35157 0.74 0.297493
Target:  5'- -uGGGCACCAAcucGgUGGCCGagccGGAACCGg -3'
miRNA:   3'- cgUCCGUGGUU---CgACCGGU----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 46053 0.74 0.305001
Target:  5'- cGCAcGGUcuuGCCGcgcGGCUGGaCCAGGAACCc -3'
miRNA:   3'- -CGU-CCG---UGGU---UCGACC-GGUUCUUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.