miRNA display CGI


Results 61 - 80 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 23056 0.72 0.379055
Target:  5'- --cGGCcugGCCAAGCUGGCCA---ACCGg -3'
miRNA:   3'- cguCCG---UGGUUCGACCGGUucuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 58100 0.72 0.397069
Target:  5'- -gAGcGCGCCGAGCaUGGCCGGGu-CCGc -3'
miRNA:   3'- cgUC-CGUGGUUCG-ACCGGUUCuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 6307 0.71 0.454275
Target:  5'- cCAGGUccACCAGGCcguacuUGGCCGAGAggAUCAu -3'
miRNA:   3'- cGUCCG--UGGUUCG------ACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 22255 0.7 0.461239
Target:  5'- cGCAGGCGCgAgcaugggaccgccuGGCggcGGCCAAGGcCCGc -3'
miRNA:   3'- -CGUCCGUGgU--------------UCGa--CCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 57680 0.7 0.463239
Target:  5'- aGCAGGUggccaucgGCCAGGCaUGGCUgcgcaacGAGAugGCCAa -3'
miRNA:   3'- -CGUCCG--------UGGUUCG-ACCGG-------UUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 65328 0.7 0.471283
Target:  5'- gGCcaGCGCCAGGCaGGCCAcgauggcggcccccAGGGCCAc -3'
miRNA:   3'- -CGucCGUGGUUCGaCCGGU--------------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 43984 0.7 0.483481
Target:  5'- cGCGGGCguacccgGCCAGcugcGUUGGCCAGGucauccacGACCAu -3'
miRNA:   3'- -CGUCCG-------UGGUU----CGACCGGUUC--------UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 19543 0.7 0.484504
Target:  5'- uGCGGGUgcGCCGGGCgGuGCCAGGucuCCGg -3'
miRNA:   3'- -CGUCCG--UGGUUCGaC-CGGUUCuu-GGU- -5'
19118 5' -55.3 NC_004684.1 + 38482 0.7 0.488608
Target:  5'- gGCAGGCACCGgcgucAGCaaGGCCAccgacgccgacggcGAGCCGa -3'
miRNA:   3'- -CGUCCGUGGU-----UCGa-CCGGUu-------------CUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 19800 0.7 0.494794
Target:  5'- gGCGGGC-CU--GCUGGCCAAGGAg-- -3'
miRNA:   3'- -CGUCCGuGGuuCGACCGGUUCUUggu -5'
19118 5' -55.3 NC_004684.1 + 47335 0.71 0.444428
Target:  5'- uGUGGGCGUCGAGCaUGGCCAccaggccacgguAGGACCc -3'
miRNA:   3'- -CGUCCGUGGUUCG-ACCGGU------------UCUUGGu -5'
19118 5' -55.3 NC_004684.1 + 25949 0.71 0.437606
Target:  5'- -aAGGUgcccaacGCCGAGCUGGCCAAGcuggugcgcgaaggcAACCc -3'
miRNA:   3'- cgUCCG-------UGGUUCGACCGGUUC---------------UUGGu -5'
19118 5' -55.3 NC_004684.1 + 50613 0.72 0.397069
Target:  5'- gGCGGGuCAUC-GGCgUGGCCGacacAGAACCAg -3'
miRNA:   3'- -CGUCC-GUGGuUCG-ACCGGU----UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55670 0.71 0.40628
Target:  5'- gGCGGcGCACCAGcuGCUGGaCCuacuuuuGGACCAg -3'
miRNA:   3'- -CGUC-CGUGGUU--CGACC-GGuu-----CUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 49605 0.71 0.40628
Target:  5'- cGCAGGCGUCGuugcGGCUGGCCGGuguCCAg -3'
miRNA:   3'- -CGUCCGUGGU----UCGACCGGUUcuuGGU- -5'
19118 5' -55.3 NC_004684.1 + 9208 0.71 0.415624
Target:  5'- aGUGGGCgcgugACCGGGUgGGCCAGGAcCCGa -3'
miRNA:   3'- -CGUCCG-----UGGUUCGaCCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 57966 0.71 0.415624
Target:  5'- gGCuGGUGCgCAcgcuGCUGGCCGAGGACa- -3'
miRNA:   3'- -CGuCCGUG-GUu---CGACCGGUUCUUGgu -5'
19118 5' -55.3 NC_004684.1 + 32954 0.71 0.425099
Target:  5'- cCAGGCGCuCGcGCUGGCCAAccucGCCGc -3'
miRNA:   3'- cGUCCGUG-GUuCGACCGGUUcu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 57070 0.71 0.432771
Target:  5'- gGCAGGCACCAccuggaacgAGgUGGCCGcccgcaugcacuGGACCu -3'
miRNA:   3'- -CGUCCGUGGU---------UCgACCGGUu-----------CUUGGu -5'
19118 5' -55.3 NC_004684.1 + 54193 0.71 0.434701
Target:  5'- aGCAGGCGCaaaccGGCggccugcucggGGCCGAGGucgGCCAg -3'
miRNA:   3'- -CGUCCGUGgu---UCGa----------CCGGUUCU---UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.