miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19118 5' -55.3 NC_004684.1 + 779 1.11 0.000735
Target:  5'- cGCAGGCACCAAGCUGGCCAAGAACCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGGUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 39572 0.71 0.424146
Target:  5'- aGCAGGagucgccCACCAggAGCaGGCCAGGA-CCGa -3'
miRNA:   3'- -CGUCC-------GUGGU--UCGaCCGGUUCUuGGU- -5'
19118 5' -55.3 NC_004684.1 + 32255 0.71 0.444428
Target:  5'- cCAGGUcgauggcagaGCCGAGCUGGCUguugAAGuAACCGg -3'
miRNA:   3'- cGUCCG----------UGGUUCGACCGG----UUC-UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 53756 0.66 0.753865
Target:  5'- cGCAGGUGCgCGgcGGCgaacGuGCgCAGGAACCAc -3'
miRNA:   3'- -CGUCCGUG-GU--UCGa---C-CG-GUUCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 61167 0.75 0.236324
Target:  5'- gGCcuGGcCGCCcAGCUGGCCGAGAucgcGCCGg -3'
miRNA:   3'- -CGu-CC-GUGGuUCGACCGGUUCU----UGGU- -5'
19118 5' -55.3 NC_004684.1 + 9557 0.75 0.262106
Target:  5'- gGCGGGUACC-GGC-GGCCAgcaccgccGGGACCAg -3'
miRNA:   3'- -CGUCCGUGGuUCGaCCGGU--------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 10091 0.74 0.29013
Target:  5'- cCGGGCA--GGGCUGGCCGGGGugCGg -3'
miRNA:   3'- cGUCCGUggUUCGACCGGUUCUugGU- -5'
19118 5' -55.3 NC_004684.1 + 3843 0.73 0.312652
Target:  5'- gGCAGcgGCCGAGgaGGCCGAGcGCCAc -3'
miRNA:   3'- -CGUCcgUGGUUCgaCCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 18782 0.73 0.336476
Target:  5'- cGCAcGGCACCGAGgUGGgCAAuGACCu -3'
miRNA:   3'- -CGU-CCGUGGUUCgACCgGUUcUUGGu -5'
19118 5' -55.3 NC_004684.1 + 15773 0.72 0.397069
Target:  5'- -aGGuGCGCCGAGCgcGGCCAAGGaacACCu -3'
miRNA:   3'- cgUC-CGUGGUUCGa-CCGGUUCU---UGGu -5'
19118 5' -55.3 NC_004684.1 + 39272 0.72 0.370256
Target:  5'- uGCAGGcCACC-AGCaaGGCCucGAACCGc -3'
miRNA:   3'- -CGUCC-GUGGuUCGa-CCGGuuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 41503 0.73 0.334036
Target:  5'- aGCAGGuCACCGcugacguucugcccGGcCUGGCCGAG-GCCGu -3'
miRNA:   3'- -CGUCC-GUGGU--------------UC-GACCGGUUCuUGGU- -5'
19118 5' -55.3 NC_004684.1 + 39126 0.81 0.09816
Target:  5'- aGCGGccucgcGCACCAGGCUGGCCGGGuccACCGc -3'
miRNA:   3'- -CGUC------CGUGGUUCGACCGGUUCu--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 60499 0.72 0.379055
Target:  5'- cGCAGGCgcACCAGGUUGacgaccucGCCccAGAGCCAg -3'
miRNA:   3'- -CGUCCG--UGGUUCGAC--------CGGu-UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 55443 0.8 0.119652
Target:  5'- cGCAGGUGCCAGGCUGGCgAccauGGCCAg -3'
miRNA:   3'- -CGUCCGUGGUUCGACCGgUuc--UUGGU- -5'
19118 5' -55.3 NC_004684.1 + 5181 0.73 0.32759
Target:  5'- aGguGGCGCU-GGUUGGCCAGGAcggcaacguguucGCCAu -3'
miRNA:   3'- -CguCCGUGGuUCGACCGGUUCU-------------UGGU- -5'
19118 5' -55.3 NC_004684.1 + 15579 0.72 0.387993
Target:  5'- cGCAGcGCGCgCGGcCUGGCCGuGGACCGg -3'
miRNA:   3'- -CGUC-CGUG-GUUcGACCGGUuCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 48393 0.71 0.425099
Target:  5'- aGCGaccuGCG-CGAGCUGGCCGAGAuuGCCGc -3'
miRNA:   3'- -CGUc---CGUgGUUCGACCGGUUCU--UGGU- -5'
19118 5' -55.3 NC_004684.1 + 44893 0.77 0.185555
Target:  5'- uGCugaauGGCACCGAGCgguUGGCCGcugccagGGAACCGg -3'
miRNA:   3'- -CGu----CCGUGGUUCG---ACCGGU-------UCUUGGU- -5'
19118 5' -55.3 NC_004684.1 + 63173 0.74 0.275834
Target:  5'- cGCAGGCGCaugcagucguGGCUGGCgGugaucAGAACCAc -3'
miRNA:   3'- -CGUCCGUGgu--------UCGACCGgU-----UCUUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.