Results 21 - 40 of 204 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 18327 | 0.7 | 0.46424 |
Target: 5'- cGUGGGCGaCGAGCaccUGGCCGAGccuGCCGa -3' miRNA: 3'- -CGUCCGUgGUUCG---ACCGGUUCu--UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 32255 | 0.71 | 0.444428 |
Target: 5'- cCAGGUcgauggcagaGCCGAGCUGGCUguugAAGuAACCGg -3' miRNA: 3'- cGUCCG----------UGGUUCGACCGG----UUC-UUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 41503 | 0.73 | 0.334036 |
Target: 5'- aGCAGGuCACCGcugacguucugcccGGcCUGGCCGAG-GCCGu -3' miRNA: 3'- -CGUCC-GUGGU--------------UC-GACCGGUUCuUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 44893 | 0.77 | 0.185555 |
Target: 5'- uGCugaauGGCACCGAGCgguUGGCCGcugccagGGAACCGg -3' miRNA: 3'- -CGu----CCGUGGUUCG---ACCGGU-------UCUUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 58530 | 0.69 | 0.547598 |
Target: 5'- aGCAGGCGCuCAGGCgacacguccaGGCCcauGGCCAg -3' miRNA: 3'- -CGUCCGUG-GUUCGa---------CCGGuucUUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 46961 | 0.7 | 0.484504 |
Target: 5'- uGCAcaGCGCCAGGCUGaugcGCCAGGAGucguCCAg -3' miRNA: 3'- -CGUc-CGUGGUUCGAC----CGGUUCUU----GGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 39572 | 0.71 | 0.424146 |
Target: 5'- aGCAGGagucgccCACCAggAGCaGGCCAGGA-CCGa -3' miRNA: 3'- -CGUCC-------GUGGU--UCGaCCGGUUCUuGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 55443 | 0.8 | 0.119652 |
Target: 5'- cGCAGGUGCCAGGCUGGCgAccauGGCCAg -3' miRNA: 3'- -CGUCCGUGGUUCGACCGgUuc--UUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 9764 | 0.7 | 0.484504 |
Target: 5'- cGCgAGGuCACCGgguGGCUGGCCGu--ACCGc -3' miRNA: 3'- -CG-UCC-GUGGU---UCGACCGGUucuUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 39126 | 0.81 | 0.09816 |
Target: 5'- aGCGGccucgcGCACCAGGCUGGCCGGGuccACCGc -3' miRNA: 3'- -CGUC------CGUGGUUCGACCGGUUCu--UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 48393 | 0.71 | 0.425099 |
Target: 5'- aGCGaccuGCG-CGAGCUGGCCGAGAuuGCCGc -3' miRNA: 3'- -CGUc---CGUgGUUCGACCGGUUCU--UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 27614 | 0.7 | 0.474318 |
Target: 5'- cCAGcGCAUCGAGaacGGCCAGGAcGCCAu -3' miRNA: 3'- cGUC-CGUGGUUCga-CCGGUUCU-UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 60499 | 0.72 | 0.379055 |
Target: 5'- cGCAGGCgcACCAGGUUGacgaccucGCCccAGAGCCAg -3' miRNA: 3'- -CGUCCG--UGGUUCGAC--------CGGu-UCUUGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 18782 | 0.73 | 0.336476 |
Target: 5'- cGCAcGGCACCGAGgUGGgCAAuGACCu -3' miRNA: 3'- -CGU-CCGUGGUUCgACCgGUUcUUGGu -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 10091 | 0.74 | 0.29013 |
Target: 5'- cCGGGCA--GGGCUGGCCGGGGugCGg -3' miRNA: 3'- cGUCCGUggUUCGACCGGUUCUugGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 61167 | 0.75 | 0.236324 |
Target: 5'- gGCcuGGcCGCCcAGCUGGCCGAGAucgcGCCGg -3' miRNA: 3'- -CGu-CC-GUGGuUCGACCGGUUCU----UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 1731 | 0.69 | 0.558386 |
Target: 5'- cGCAGGCcuacucgggACCGGGUaGGUCGGGA-CCGg -3' miRNA: 3'- -CGUCCG---------UGGUUCGaCCGGUUCUuGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 47630 | 0.69 | 0.547598 |
Target: 5'- gGCGGGCACC-GGCaGGCCGcgcAGGuACUg -3' miRNA: 3'- -CGUCCGUGGuUCGaCCGGU---UCU-UGGu -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 2640 | 0.69 | 0.526229 |
Target: 5'- cGCcuGGCACC-AGCUcGGCCAgcAGGucgGCCAc -3' miRNA: 3'- -CGu-CCGUGGuUCGA-CCGGU--UCU---UGGU- -5' |
|||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 7605 | 0.7 | 0.494794 |
Target: 5'- gGCGGuGUucGCCuccuGGCcGGUCGAGAGCCAg -3' miRNA: 3'- -CGUC-CG--UGGu---UCGaCCGGUUCUUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home