Results 41 - 60 of 204 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19118 | 5' | -55.3 | NC_004684.1 | + | 47859 | 0.69 | 0.536877 |
Target: 5'- cCGGcGCACCcgcAGCUGGCguuGAGCCAg -3' miRNA: 3'- cGUC-CGUGGu--UCGACCGguuCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 39572 | 0.71 | 0.424146 |
Target: 5'- aGCAGGagucgccCACCAggAGCaGGCCAGGA-CCGa -3' miRNA: 3'- -CGUCC-------GUGGU--UCGaCCGGUUCUuGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 55443 | 0.8 | 0.119652 |
Target: 5'- cGCAGGUGCCAGGCUGGCgAccauGGCCAg -3' miRNA: 3'- -CGUCCGUGGUUCGACCGgUuc--UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 44236 | 0.69 | 0.536877 |
Target: 5'- aGCAGGCucucGCCaAAGUUGGCCGccgcccGGaAGCCu -3' miRNA: 3'- -CGUCCG----UGG-UUCGACCGGU------UC-UUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 39126 | 0.81 | 0.09816 |
Target: 5'- aGCGGccucgcGCACCAGGCUGGCCGGGuccACCGc -3' miRNA: 3'- -CGUC------CGUGGUUCGACCGGUUCu--UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 33419 | 0.67 | 0.635098 |
Target: 5'- aGUAGGCGgUAGGUccgacGGCCAuGGGGCCGa -3' miRNA: 3'- -CGUCCGUgGUUCGa----CCGGU-UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 61167 | 0.75 | 0.236324 |
Target: 5'- gGCcuGGcCGCCcAGCUGGCCGAGAucgcGCCGg -3' miRNA: 3'- -CGu-CC-GUGGuUCGACCGGUUCU----UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 20874 | 0.67 | 0.635098 |
Target: 5'- uGCAGGCAaguCCAccgucaucggcaAGCUGGCCu----CCAa -3' miRNA: 3'- -CGUCCGU---GGU------------UCGACCGGuucuuGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 57979 | 0.68 | 0.624072 |
Target: 5'- cGC-GGCuguCCAGGCUGGCCu-GAucGCUg -3' miRNA: 3'- -CGuCCGu--GGUUCGACCGGuuCU--UGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 41088 | 0.68 | 0.60205 |
Target: 5'- gGC-GGCcugGCCGAGCugcguaccgaUGGCCGAGGucACCGa -3' miRNA: 3'- -CGuCCG---UGGUUCG----------ACCGGUUCU--UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 64617 | 0.68 | 0.580132 |
Target: 5'- cGCuGGCGuCCAGGCUGGaCAccuGGAACg- -3' miRNA: 3'- -CGuCCGU-GGUUCGACCgGU---UCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 1731 | 0.69 | 0.558386 |
Target: 5'- cGCAGGCcuacucgggACCGGGUaGGUCGGGA-CCGg -3' miRNA: 3'- -CGUCCG---------UGGUUCGaCCGGUUCUuGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 47630 | 0.69 | 0.547598 |
Target: 5'- gGCGGGCACC-GGCaGGCCGcgcAGGuACUg -3' miRNA: 3'- -CGUCCGUGGuUCGaCCGGU---UCU-UGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 19582 | 0.7 | 0.505181 |
Target: 5'- aGCAGGCACgCcAGUUGuucgccGCCGAGAACa- -3' miRNA: 3'- -CGUCCGUG-GuUCGAC------CGGUUCUUGgu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 9764 | 0.7 | 0.484504 |
Target: 5'- cGCgAGGuCACCGgguGGCUGGCCGu--ACCGc -3' miRNA: 3'- -CG-UCC-GUGGU---UCGACCGGUucuUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 18327 | 0.7 | 0.46424 |
Target: 5'- cGUGGGCGaCGAGCaccUGGCCGAGccuGCCGa -3' miRNA: 3'- -CGUCCGUgGUUCG---ACCGGUUCu--UGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 32255 | 0.71 | 0.444428 |
Target: 5'- cCAGGUcgauggcagaGCCGAGCUGGCUguugAAGuAACCGg -3' miRNA: 3'- cGUCCG----------UGGUUCGACCGG----UUC-UUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 60499 | 0.72 | 0.379055 |
Target: 5'- cGCAGGCgcACCAGGUUGacgaccucGCCccAGAGCCAg -3' miRNA: 3'- -CGUCCG--UGGUUCGAC--------CGGu-UCUUGGU- -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 18782 | 0.73 | 0.336476 |
Target: 5'- cGCAcGGCACCGAGgUGGgCAAuGACCu -3' miRNA: 3'- -CGU-CCGUGGUUCgACCgGUUcUUGGu -5' |
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19118 | 5' | -55.3 | NC_004684.1 | + | 10091 | 0.74 | 0.29013 |
Target: 5'- cCGGGCA--GGGCUGGCCGGGGugCGg -3' miRNA: 3'- cGUCCGUggUUCGACCGGUUCUugGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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