miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 3' -52.8 NC_004684.1 + 41089 0.66 0.860573
Target:  5'- gGUGUACACCUcgaacCACAAGGG--CGCg -3'
miRNA:   3'- gCACGUGUGGAcc---GUGUUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 62983 0.67 0.852195
Target:  5'- gGUGCGCACgUGGC-CGGuggccGGGaaCGCg -3'
miRNA:   3'- gCACGUGUGgACCGuGUU-----CUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 2776 0.67 0.852195
Target:  5'- gGUGUccaGCCUGGacgccaGCGAguucGAGUUCGCc -3'
miRNA:   3'- gCACGug-UGGACCg-----UGUU----CUCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 47418 0.67 0.852195
Target:  5'- -uUGCGCACCUGGUGCuccGGcaccaccuGG-UCGCg -3'
miRNA:   3'- gcACGUGUGGACCGUGu--UC--------UCaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 61205 0.67 0.843586
Target:  5'- --cGUACACCUGGCc-----GUUCGCg -3'
miRNA:   3'- gcaCGUGUGGACCGuguucuCAAGCG- -5'
19119 3' -52.8 NC_004684.1 + 40814 0.67 0.843586
Target:  5'- cCGcGCACACCgccGCGCGccAGGGcgCGCc -3'
miRNA:   3'- -GCaCGUGUGGac-CGUGU--UCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 6477 0.67 0.843586
Target:  5'- gCGUGCgACGCCgUGGC-CGAGAuggUCGa -3'
miRNA:   3'- -GCACG-UGUGG-ACCGuGUUCUca-AGCg -5'
19119 3' -52.8 NC_004684.1 + 3279 0.67 0.837425
Target:  5'- -aUGCGCACCgaguucgaggccaUGGCACAGcgcgagcgcgacgacGAGUgggugCGCa -3'
miRNA:   3'- gcACGUGUGG-------------ACCGUGUU---------------CUCAa----GCG- -5'
19119 3' -52.8 NC_004684.1 + 37001 0.67 0.834752
Target:  5'- gGUGUACAUCcGGCGCGcGGGGUcCGa -3'
miRNA:   3'- gCACGUGUGGaCCGUGU-UCUCAaGCg -5'
19119 3' -52.8 NC_004684.1 + 18221 0.67 0.834752
Target:  5'- -aUGC-CGCaCUGGgGCAAGGGUcCGUa -3'
miRNA:   3'- gcACGuGUG-GACCgUGUUCUCAaGCG- -5'
19119 3' -52.8 NC_004684.1 + 46433 0.67 0.834752
Target:  5'- cCG-GCGCAUCUGGaACAGcAGUUCGg -3'
miRNA:   3'- -GCaCGUGUGGACCgUGUUcUCAAGCg -5'
19119 3' -52.8 NC_004684.1 + 28273 0.67 0.834752
Target:  5'- gGUGCGCGaggccgCUGGCguggugcucacGCAGGAGccgCGCa -3'
miRNA:   3'- gCACGUGUg-----GACCG-----------UGUUCUCaa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 6577 0.67 0.829347
Target:  5'- cCGUGUccgGCACCUGGUACGccacgcaccgaggcGAGUuccuggUCGCc -3'
miRNA:   3'- -GCACG---UGUGGACCGUGUu-------------CUCA------AGCG- -5'
19119 3' -52.8 NC_004684.1 + 13732 0.67 0.825703
Target:  5'- cCGUGUGCGCCUGcGCuuCAccgacGGGGUgcuccagCGCa -3'
miRNA:   3'- -GCACGUGUGGAC-CGu-GU-----UCUCAa------GCG- -5'
19119 3' -52.8 NC_004684.1 + 9434 0.67 0.825703
Target:  5'- gCGUGCGCACCaGcCGCAGcGAGcacCGCa -3'
miRNA:   3'- -GCACGUGUGGaCcGUGUU-CUCaa-GCG- -5'
19119 3' -52.8 NC_004684.1 + 17079 0.67 0.825703
Target:  5'- cCGgGCGCACCgacugGGCACGcguGAagUCGCc -3'
miRNA:   3'- -GCaCGUGUGGa----CCGUGUu--CUcaAGCG- -5'
19119 3' -52.8 NC_004684.1 + 42201 0.67 0.825703
Target:  5'- gGUGCcaGCGCCUGGC-CAaccaggucGGAGaUgGCg -3'
miRNA:   3'- gCACG--UGUGGACCGuGU--------UCUCaAgCG- -5'
19119 3' -52.8 NC_004684.1 + 61678 0.67 0.816448
Target:  5'- aCG-GCAuCugC-GGCGCGAGGGcgCGCu -3'
miRNA:   3'- -GCaCGU-GugGaCCGUGUUCUCaaGCG- -5'
19119 3' -52.8 NC_004684.1 + 26529 0.67 0.816448
Target:  5'- aCGUGuCGCGCCUGG-GCGgucaggccGGGGUguaCGCg -3'
miRNA:   3'- -GCAC-GUGUGGACCgUGU--------UCUCAa--GCG- -5'
19119 3' -52.8 NC_004684.1 + 57597 0.67 0.816448
Target:  5'- gGUGC-CACC-GGCGCAGGGccUCGg -3'
miRNA:   3'- gCACGuGUGGaCCGUGUUCUcaAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.