miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19119 5' -61.8 NC_004684.1 + 2995 0.66 0.462736
Target:  5'- gAGGCCAucaccGCGCCgUGCACaCaGGUGCugaucaccgaggGGCc -3'
miRNA:   3'- -UCCGGU-----UGCGG-GCGUG-GcCCAUG------------CCG- -5'
19119 5' -61.8 NC_004684.1 + 64241 0.66 0.462736
Target:  5'- cAGGCgCAGgaacUGCaCCGUgaccCCGGcGUACGGCc -3'
miRNA:   3'- -UCCG-GUU----GCG-GGCGu---GGCC-CAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 9660 0.66 0.462736
Target:  5'- cGGgCGGCGgUgaaGCGCgCGGuGUACGGCg -3'
miRNA:   3'- uCCgGUUGCgGg--CGUG-GCC-CAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 31655 0.66 0.462736
Target:  5'- -cGCCGggACGCUgGCACUGucggcGGUGCGGg -3'
miRNA:   3'- ucCGGU--UGCGGgCGUGGC-----CCAUGCCg -5'
19119 5' -61.8 NC_004684.1 + 31859 0.66 0.462736
Target:  5'- cGGCUccucgUGCCCGCACUcGGUGCaGUa -3'
miRNA:   3'- uCCGGuu---GCGGGCGUGGcCCAUGcCG- -5'
19119 5' -61.8 NC_004684.1 + 24756 0.66 0.462736
Target:  5'- -cGCUGGCGgCaccaGCACCGGcgGCGGCg -3'
miRNA:   3'- ucCGGUUGCgGg---CGUGGCCcaUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 57240 0.66 0.461796
Target:  5'- uGGCCAGCGgCgGCuggcugaGCaCGaGGUcaGCGGCg -3'
miRNA:   3'- uCCGGUUGCgGgCG-------UG-GC-CCA--UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 44932 0.66 0.45992
Target:  5'- cGGCCuggAGCGCgggcgggaucgccgCCGCGCCGacGGcgAUGGCg -3'
miRNA:   3'- uCCGG---UUGCG--------------GGCGUGGC--CCa-UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 59739 0.66 0.45992
Target:  5'- uAGGCCGccgacccggucaccACGCCCGC-CaCGGcGaGCuGGCu -3'
miRNA:   3'- -UCCGGU--------------UGCGGGCGuG-GCC-CaUG-CCG- -5'
19119 5' -61.8 NC_004684.1 + 51623 0.66 0.453387
Target:  5'- uGGCC-GCGCUcggCGCACCuuucGGUguacGCGGCc -3'
miRNA:   3'- uCCGGuUGCGG---GCGUGGc---CCA----UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 14447 0.66 0.453387
Target:  5'- gAGGUggugaccgaacgCAGCGCCUGC-CUGGaaUGCGGCc -3'
miRNA:   3'- -UCCG------------GUUGCGGGCGuGGCCc-AUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 40274 0.66 0.453387
Target:  5'- aAGGCCAcccCGUugaCCGCGCCGucguuGGUgucgAUGGCg -3'
miRNA:   3'- -UCCGGUu--GCG---GGCGUGGC-----CCA----UGCCG- -5'
19119 5' -61.8 NC_004684.1 + 37645 0.66 0.453387
Target:  5'- uGGCCAugG-CCGC-CCGGuca-GGCa -3'
miRNA:   3'- uCCGGUugCgGGCGuGGCCcaugCCG- -5'
19119 5' -61.8 NC_004684.1 + 55811 0.66 0.453387
Target:  5'- cGGUgAGCGCgugcgaGCACgGGGUGcCGGUg -3'
miRNA:   3'- uCCGgUUGCGgg----CGUGgCCCAU-GCCG- -5'
19119 5' -61.8 NC_004684.1 + 57283 0.66 0.453387
Target:  5'- cAGGuCCAcGCGCuuGuCGCCGGuGUGgcugagcaccCGGCg -3'
miRNA:   3'- -UCC-GGU-UGCGggC-GUGGCC-CAU----------GCCG- -5'
19119 5' -61.8 NC_004684.1 + 13724 0.66 0.453387
Target:  5'- cGGCCcacccguguGCGCCUGCGCUucaccgacgGGGUGCuccaGCg -3'
miRNA:   3'- uCCGGu--------UGCGGGCGUGG---------CCCAUGc---CG- -5'
19119 5' -61.8 NC_004684.1 + 11651 0.66 0.451529
Target:  5'- cGGGCCGgugcaacggggaGCGCaucugcgccaaaCGuCGCCGGaUACGGCu -3'
miRNA:   3'- -UCCGGU------------UGCGg-----------GC-GUGGCCcAUGCCG- -5'
19119 5' -61.8 NC_004684.1 + 53186 0.66 0.446904
Target:  5'- cAGGCCGAcCGCgCCGCugGCCaggaaugcguccaGGGUGCccagcaccaccacguGGCa -3'
miRNA:   3'- -UCCGGUU-GCG-GGCG--UGG-------------CCCAUG---------------CCG- -5'
19119 5' -61.8 NC_004684.1 + 65751 0.66 0.445061
Target:  5'- uGGCCucgcgggcguuggcCGCCgCGCGCCGGuGgGCGcGCg -3'
miRNA:   3'- uCCGGuu------------GCGG-GCGUGGCC-CaUGC-CG- -5'
19119 5' -61.8 NC_004684.1 + 18135 0.66 0.444141
Target:  5'- -cGCCAacauggACGCgCCGCugUGGGgcgACGuGCc -3'
miRNA:   3'- ucCGGU------UGCG-GGCGugGCCCa--UGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.