miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19120 3' -56.4 NC_004684.1 + 36 1.11 0.000864
Target:  5'- cGGUACCAGGGGUCCCCGAAAACCGGAu -3'
miRNA:   3'- -CCAUGGUCCCCAGGGGCUUUUGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 2010 0.66 0.758687
Target:  5'- --cGCCuggguGGGGGUCCgCGAuGACCGu- -3'
miRNA:   3'- ccaUGG-----UCCCCAGGgGCUuUUGGCcu -5'
19120 3' -56.4 NC_004684.1 + 2853 0.69 0.539019
Target:  5'- uGG-ACCAcGGGUUCCUGGucgcGCCGGAc -3'
miRNA:   3'- -CCaUGGUcCCCAGGGGCUuu--UGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 3911 0.67 0.707768
Target:  5'- gGGUACCGGGaagaCCCCGcuGACCaccuGGAg -3'
miRNA:   3'- -CCAUGGUCCcca-GGGGCuuUUGG----CCU- -5'
19120 3' -56.4 NC_004684.1 + 5312 0.7 0.518508
Target:  5'- uGUACCAGGGuUCCCCGAcGAAUCc-- -3'
miRNA:   3'- cCAUGGUCCCcAGGGGCU-UUUGGccu -5'
19120 3' -56.4 NC_004684.1 + 7094 0.66 0.748704
Target:  5'- --gGCCcuGGaGG-CCgCCGAGGACCGGGc -3'
miRNA:   3'- ccaUGGu-CC-CCaGG-GGCUUUUGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 8461 0.66 0.718132
Target:  5'- --gGCCuGGcuguuGUCCCCGGAGGCgGGGu -3'
miRNA:   3'- ccaUGGuCCc----CAGGGGCUUUUGgCCU- -5'
19120 3' -56.4 NC_004684.1 + 11819 0.68 0.623203
Target:  5'- uGGUGCCuGGac-CCCCGGccACCGGGc -3'
miRNA:   3'- -CCAUGGuCCccaGGGGCUuuUGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 14207 0.68 0.601951
Target:  5'- --gGCCAGcGGcgcggucggccuGUCCCCGGAGgccuucacGCCGGAc -3'
miRNA:   3'- ccaUGGUC-CC------------CAGGGGCUUU--------UGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 15603 0.67 0.694194
Target:  5'- cGGUGCgCuaccGGGUgCCCGAAGgcaacgcgcgcgagGCCGGGu -3'
miRNA:   3'- -CCAUG-Guc--CCCAgGGGCUUU--------------UGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 15922 0.68 0.633844
Target:  5'- aGGUcGCCAuccuGGGGgCCUCGGccACCGGGc -3'
miRNA:   3'- -CCA-UGGU----CCCCaGGGGCUuuUGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 20762 0.71 0.449479
Target:  5'- cGGUGCCguccacaccggAGGcGGUggCCCCGAAGccACCGGc -3'
miRNA:   3'- -CCAUGG-----------UCC-CCA--GGGGCUUU--UGGCCu -5'
19120 3' -56.4 NC_004684.1 + 22904 0.66 0.757694
Target:  5'- cGGUGCCAGcgacaaggugaccGGGUUCCUGG--ACCGc- -3'
miRNA:   3'- -CCAUGGUC-------------CCCAGGGGCUuuUGGCcu -5'
19120 3' -56.4 NC_004684.1 + 25876 0.66 0.748704
Target:  5'- cGGUGCCAGGG--CCUCGuagcGGGCCauGGAc -3'
miRNA:   3'- -CCAUGGUCCCcaGGGGCu---UUUGG--CCU- -5'
19120 3' -56.4 NC_004684.1 + 32889 0.68 0.611507
Target:  5'- uGGUACaccgcccaauuuuCGGGGGugUCCUCGGcgguGCCGGAc -3'
miRNA:   3'- -CCAUG-------------GUCCCC--AGGGGCUuu--UGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 35363 0.7 0.475537
Target:  5'- cGGUGCCAgcuguGGGcGUUCCCGcAAcagggcaaccugguGGCCGGAu -3'
miRNA:   3'- -CCAUGGU-----CCC-CAGGGGC-UU--------------UUGGCCU- -5'
19120 3' -56.4 NC_004684.1 + 36132 0.67 0.697336
Target:  5'- cGGUuCCAGGuGUCCC-GGAGGCCGu- -3'
miRNA:   3'- -CCAuGGUCCcCAGGGgCUUUUGGCcu -5'
19120 3' -56.4 NC_004684.1 + 37161 0.68 0.601951
Target:  5'- uGGUGgguUCGGGGGccgccUCCCCGAucACCauGGAc -3'
miRNA:   3'- -CCAU---GGUCCCC-----AGGGGCUuuUGG--CCU- -5'
19120 3' -56.4 NC_004684.1 + 37587 0.7 0.508369
Target:  5'- --cACCAGGGuGUCCCgGuagguGCCGGu -3'
miRNA:   3'- ccaUGGUCCC-CAGGGgCuuu--UGGCCu -5'
19120 3' -56.4 NC_004684.1 + 38815 0.67 0.665723
Target:  5'- cGGUGCCcgccuGGcGGUgCCCGAcgGCCuGGu -3'
miRNA:   3'- -CCAUGGu----CC-CCAgGGGCUuuUGG-CCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.